his paper presents HAoS, the first hardware architecture of the bio-inspired computational paradigm known as Systemic Computation (SC). SC was designed to support the modelling of biological processes inherently by defining a massively parallel non-conventional computer architecture and a model of natural behaviour. In this work we describe a novel custom digital design, which addresses the SC architecture parallelism requirement by exploiting the inbuilt parallelism of a Field Programmable Gate Array (FPGA) and by using the highly efficient matching capability of a Ternary Content Addressable Memory (TCAM). Basic processing capabilities are embedded in HAoS in order to minimize time-demanding data transfers. Its custom instruction set can ...
This paper introduces a scalable FPGA implementation of a stochastic simulation algorithm (SSA) call...
Embedded systems found their way into all areas of technology and everyday life, from transport syst...
The potential of FPGAs for High-Performance Computing is increasingly recognized, but most work focu...
Natural systems provide unique examples of computation in a form very different from contemporary co...
After more than 30 years, reconfigurable computing has grown from a concept to a mature field of scien...
Mathematical and statistical modeling of biological systems is a desired goal for many years. Many b...
Stochastic simulation of large-scale biochemical reaction networks, with thousands of reactions, is ...
Difficulties and dangers in doing experiments on living systems and providing a testbed for theorist...
This thesis explores the use of reconfigurable hardware in modeling chemical species reacting in a s...
There are many computationally-intensive applications that hunger for high-perform-ance computer sys...
This book is concerned with the emerging field of High Performance Reconfigurable Computing (HPRC), ...
Field-programmable gate arrays represent an army of logical units which can be organized in a highly...
In this paper a novel method of computation using FPGA technology is presented. In severalcases this...
Stochastic simulation of biochemical reaction networks are widely focused by life scientists to repr...
This paper introduces a scalable FPGA implementation of a stochastic simulation algorithm (SSA) call...
Embedded systems found their way into all areas of technology and everyday life, from transport syst...
The potential of FPGAs for High-Performance Computing is increasingly recognized, but most work focu...
Natural systems provide unique examples of computation in a form very different from contemporary co...
After more than 30 years, reconfigurable computing has grown from a concept to a mature field of scien...
Mathematical and statistical modeling of biological systems is a desired goal for many years. Many b...
Stochastic simulation of large-scale biochemical reaction networks, with thousands of reactions, is ...
Difficulties and dangers in doing experiments on living systems and providing a testbed for theorist...
This thesis explores the use of reconfigurable hardware in modeling chemical species reacting in a s...
There are many computationally-intensive applications that hunger for high-perform-ance computer sys...
This book is concerned with the emerging field of High Performance Reconfigurable Computing (HPRC), ...
Field-programmable gate arrays represent an army of logical units which can be organized in a highly...
In this paper a novel method of computation using FPGA technology is presented. In severalcases this...
Stochastic simulation of biochemical reaction networks are widely focused by life scientists to repr...
This paper introduces a scalable FPGA implementation of a stochastic simulation algorithm (SSA) call...
Embedded systems found their way into all areas of technology and everyday life, from transport syst...
The potential of FPGAs for High-Performance Computing is increasingly recognized, but most work focu...