Biopolymers, like proteins, DNA and RNA, attain secondary and tertiary structures which affect their mechanics and function. In some cases, the secondary structure is local and in other cases it is global, affecting both their local and global topology, and even their global architecture. We use tools from topology to examine the effects of local and global entanglement on protein folding kinetics. Using Field Theoretic simulations, we examine the role of global changes in molecular architecture in polymer solutions.Non UBCUnreviewedAuthor affiliation: University of California Santa BarbaraPostdoctora
We consider that the biopolymer chain forms intramolecular contacts at the expense of losing conform...
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, February, 2020Cataloge...
ABSTRACT: The unfolded state and flexible linkers in the folded structure play essential roles in pr...
We investigate aspects of topology in protein folding. For this we numerically simulate the temperat...
Physics of protein folding has been dominated by conceptual frameworks including nucleation-propagat...
Ropes or yarns, especially when disorderly packed, are prone to develop knots. Polymers are no excep...
n the last couple of decades, growing attention was drawn to proteins having an entangled topology i...
n the last couple of decades, growing attention was drawn to proteins having an entangled topology i...
In this chapter, we discuss emerging concepts and tools for engineering molecular folds. We focus on...
Folded biomolecules display a bewildering structural complexity and diversity. They have therefore b...
Macromolecular assemblies such as protein complexes and protein/RNA condensates are involved in most...
Biopolymer unfolding events are ubiquitous in biology and mechanical unfolding is an established app...
Linear chains with intra-chain contacts can adopt different topologies and allow transitions between...
The three-dimensional structures of proteins often show a modular architecture comprised of discrete...
Linear chains with intra-chain contacts can adopt different topologies and allow transitions between...
We consider that the biopolymer chain forms intramolecular contacts at the expense of losing conform...
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, February, 2020Cataloge...
ABSTRACT: The unfolded state and flexible linkers in the folded structure play essential roles in pr...
We investigate aspects of topology in protein folding. For this we numerically simulate the temperat...
Physics of protein folding has been dominated by conceptual frameworks including nucleation-propagat...
Ropes or yarns, especially when disorderly packed, are prone to develop knots. Polymers are no excep...
n the last couple of decades, growing attention was drawn to proteins having an entangled topology i...
n the last couple of decades, growing attention was drawn to proteins having an entangled topology i...
In this chapter, we discuss emerging concepts and tools for engineering molecular folds. We focus on...
Folded biomolecules display a bewildering structural complexity and diversity. They have therefore b...
Macromolecular assemblies such as protein complexes and protein/RNA condensates are involved in most...
Biopolymer unfolding events are ubiquitous in biology and mechanical unfolding is an established app...
Linear chains with intra-chain contacts can adopt different topologies and allow transitions between...
The three-dimensional structures of proteins often show a modular architecture comprised of discrete...
Linear chains with intra-chain contacts can adopt different topologies and allow transitions between...
We consider that the biopolymer chain forms intramolecular contacts at the expense of losing conform...
Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, February, 2020Cataloge...
ABSTRACT: The unfolded state and flexible linkers in the folded structure play essential roles in pr...