Add to ORKGThe Sequence Read Archive contains RNA-seq data for over 450K samples, including over 140K from humans. Large-scale projects like GTEx and ICGC are generating RNA-seq data on many thousands of samples. Such huge datasets are valuable, but unwieldy for typical researchers. I will describe work toward the goal of making it easy for researchers to use the archived RNA-seq data available today. I will highlight Rail-RNA (http://rail.bio), its dbGaP-protected version (http://docs.rail.bio/dbgap/), as well as the recount resource (https://jhubiostatistics.shinyapps.io/recount/) and Snaptron service/API (http://snaptron.cs.jhu.edu). Besides showcasing these tools and resources, I'll expound three themes: (a) pulic data is valuable but not easy to ...
In recent years, the introduction of massively parallel sequencing platforms for Next Generation Seq...
Reference is regularly made to the power of new genomic sequencing approaches. Using powerful techno...
RNA-seq has become the standard tool for collecting genome-wide expression data in diverse fields, f...
The Sequence Read Archive contains RNA-seq data for over 450K samples, including over 140K from huma...
Background: RNA sequencing (RNA-seq) is an indispensable tool in the study of gene regulation. While...
RNA-seq is now the primary technology used to measure transcriptional abundance. The analysis of RNA...
We present recount3, a resource consisting of over 750,000 publicly available human and mouse RNA se...
BACKGROUND: RNA sequencing (RNA-seq) is an indispensable tool in the study of gene regulation. While...
BACKGROUND: RNA sequencing (RNA-seq) is an indispensable tool in the study of gene regulation. While...
RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be ...
Thesis (Ph.D.)--University of Washington, 2020High throughput sequencing of RNA (RNA-seq) has become...
Background: Transcriptome profiling by RNA-seq has enhanced scientific understanding of gene regulat...
The past decade has seen tremendous growth in the area of high throughput sequencing technology, whi...
RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be ...
RNA-Seq techniques generate hundreds of millions of short RNA reads using next-generation sequencing...
In recent years, the introduction of massively parallel sequencing platforms for Next Generation Seq...
Reference is regularly made to the power of new genomic sequencing approaches. Using powerful techno...
RNA-seq has become the standard tool for collecting genome-wide expression data in diverse fields, f...
The Sequence Read Archive contains RNA-seq data for over 450K samples, including over 140K from huma...
Background: RNA sequencing (RNA-seq) is an indispensable tool in the study of gene regulation. While...
RNA-seq is now the primary technology used to measure transcriptional abundance. The analysis of RNA...
We present recount3, a resource consisting of over 750,000 publicly available human and mouse RNA se...
BACKGROUND: RNA sequencing (RNA-seq) is an indispensable tool in the study of gene regulation. While...
BACKGROUND: RNA sequencing (RNA-seq) is an indispensable tool in the study of gene regulation. While...
RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be ...
Thesis (Ph.D.)--University of Washington, 2020High throughput sequencing of RNA (RNA-seq) has become...
Background: Transcriptome profiling by RNA-seq has enhanced scientific understanding of gene regulat...
The past decade has seen tremendous growth in the area of high throughput sequencing technology, whi...
RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be ...
RNA-Seq techniques generate hundreds of millions of short RNA reads using next-generation sequencing...
In recent years, the introduction of massively parallel sequencing platforms for Next Generation Seq...
Reference is regularly made to the power of new genomic sequencing approaches. Using powerful techno...
RNA-seq has become the standard tool for collecting genome-wide expression data in diverse fields, f...