Problems associated with fuel preference, metabolic capacity and regulation were addressed using isolated mitochondria and enzyme analyses of cardiac and skeletal muscles of spiny dogfish (Squalus acanthias), common carp (Cyprinus carpio), skipjack tuna (Katsuwonus pelamis) and rainbow (Oncorhynchus my kiss). Chondrichthian muscle is unusual because it possesses no detectible activities of carnitine palmitoyl transferase (CPT), which is involved in transport of fatty acids into mitochondria, yet demonstrates activity of B-hydroxyacyl CoA dehydrogenase, a fatty acid B-oxidation enzyme. This paradox was addressed by searching for alternate pathways for mitochondrial fatty acid utilization possibly involving peroxisomal fatty acid processing....