The free energy profile of a reaction can be estimated in a molecular dynamic (MD) approach by imposing a mechanical constraint along a reaction coordinate (RC). Many recent studies have shown that the temperature can greatly influence the path followed by the reactants. Here, we propose a practical way to construct the minimum energy path directly on the free energy surface (FES) at a given temperature. First, we follow the blue-moon ensemble method to derive the expression of the free energy gradient for a given RC. These derivatives are then used to find the actual minimum energy reaction path at finite temperature, in a way similar to the Intrinsic Reaction Path of Fukui on the potential energy surface [J. Phys. Chem. 74, 4161 (1970)]. ...
A simple, efficient, and accurate method is proposed to map multidimensional free energy landscapes....
The prototype binuclear elimination (E2) reaction illustrates the mechanism of a large number of bio...
1.1 Rare Events and free energy landscapes Many interesting physical, chemical and biological proces...
The recently introduced hills method (Proc. Natt. Acad. Sci. U.S.A. 2002, 99, 12562) is a powerful t...
<div><p>In a reaction, determination of an optimal path with a high reaction rate (or a low free ene...
In a reaction, determination of an optimal path with a high reaction rate (or a low free energy barr...
We propose a novel approach to search for free-energy landmarks, i.e., minima and the saddle points,...
ABSTRACT: The calculations of potential of mean force along complex chemical reactions or rare event...
ABSTRACT: The calculations of potential of mean force along complex chemical reactions or rare event...
The calculations of potential of mean force along complex chemical reactions or rare events pathways...
Abstract. Activated processes from chemical reactions up to confor-mational transitions of large bio...
Activated processes from chemical reactions up to conformational transitions of large biomolecules a...
A simple, efficient, and accurate method is proposed to map multidimensional free energy landscapes....
A simple, efficient, and accurate method is proposed to map multidimensional free energy landscapes....
The optimization of minimum free energy pathways (MFEP) is one of the most widely used strategies to...
A simple, efficient, and accurate method is proposed to map multidimensional free energy landscapes....
The prototype binuclear elimination (E2) reaction illustrates the mechanism of a large number of bio...
1.1 Rare Events and free energy landscapes Many interesting physical, chemical and biological proces...
The recently introduced hills method (Proc. Natt. Acad. Sci. U.S.A. 2002, 99, 12562) is a powerful t...
<div><p>In a reaction, determination of an optimal path with a high reaction rate (or a low free ene...
In a reaction, determination of an optimal path with a high reaction rate (or a low free energy barr...
We propose a novel approach to search for free-energy landmarks, i.e., minima and the saddle points,...
ABSTRACT: The calculations of potential of mean force along complex chemical reactions or rare event...
ABSTRACT: The calculations of potential of mean force along complex chemical reactions or rare event...
The calculations of potential of mean force along complex chemical reactions or rare events pathways...
Abstract. Activated processes from chemical reactions up to confor-mational transitions of large bio...
Activated processes from chemical reactions up to conformational transitions of large biomolecules a...
A simple, efficient, and accurate method is proposed to map multidimensional free energy landscapes....
A simple, efficient, and accurate method is proposed to map multidimensional free energy landscapes....
The optimization of minimum free energy pathways (MFEP) is one of the most widely used strategies to...
A simple, efficient, and accurate method is proposed to map multidimensional free energy landscapes....
The prototype binuclear elimination (E2) reaction illustrates the mechanism of a large number of bio...
1.1 Rare Events and free energy landscapes Many interesting physical, chemical and biological proces...