Add to ORKGThis is a pdf-version of an ongoing exchange in ResearchGate about parsimony analysis of unaligned sequence data. For reasons explained in the text, pdf is better suited for this than Researchgate's own format to provide feedback on papers. Version two of this exchange (May 2016) contains Santiago Castroviejo-Fisher's latest arguments against maximization of homology in such analyses.status: publishe
For several decades, sequence alignment has been a widely used tool in bioinformatics. For instance,...
A novel multivariate statistical approach is presented for extracting and exploiting intrinsic infor...
This study focuses on an alignment-free sequence comparison method: the number of words of length k ...
Wheeler (2012) stated that minimization of ad hoc hypotheses as emphasized by Farris (1983) always l...
© Oxford University Press 2005. All rights reserved. Problems can arise in parsimony analyses when d...
Parsimony analysis provides a straightforward way of assessing homology on a tree: a state shared by...
Anagallis is a computer program for parsimony analysis of character hierarchies that provides a solu...
Minimal encoding length (Kolmogorov complexity) is a measure of information content (randomness) the...
Large-scale multigene datasets used in phylogenomics and comparative genomics often contain sequence...
In recent years, several publications in computer science journals have proposed new heuristic metho...
Abstract. Gene duplication and gene loss as well as other biological events can result in multiple c...
MOTIVATION: Noise in database searches resulting from random sequence similarities increases as the...
... this paper we present two new methods of character coding for parsimony-based analysis of genom...
We have devised an algorithm for finding partial homologies among a set of nucleotide sequences. The...
Multiple sequence alignment (MSA) is ubiquitous in evolution and bioinformatics. MSAs are usually ta...
For several decades, sequence alignment has been a widely used tool in bioinformatics. For instance,...
A novel multivariate statistical approach is presented for extracting and exploiting intrinsic infor...
This study focuses on an alignment-free sequence comparison method: the number of words of length k ...
Wheeler (2012) stated that minimization of ad hoc hypotheses as emphasized by Farris (1983) always l...
© Oxford University Press 2005. All rights reserved. Problems can arise in parsimony analyses when d...
Parsimony analysis provides a straightforward way of assessing homology on a tree: a state shared by...
Anagallis is a computer program for parsimony analysis of character hierarchies that provides a solu...
Minimal encoding length (Kolmogorov complexity) is a measure of information content (randomness) the...
Large-scale multigene datasets used in phylogenomics and comparative genomics often contain sequence...
In recent years, several publications in computer science journals have proposed new heuristic metho...
Abstract. Gene duplication and gene loss as well as other biological events can result in multiple c...
MOTIVATION: Noise in database searches resulting from random sequence similarities increases as the...
... this paper we present two new methods of character coding for parsimony-based analysis of genom...
We have devised an algorithm for finding partial homologies among a set of nucleotide sequences. The...
Multiple sequence alignment (MSA) is ubiquitous in evolution and bioinformatics. MSAs are usually ta...
For several decades, sequence alignment has been a widely used tool in bioinformatics. For instance,...
A novel multivariate statistical approach is presented for extracting and exploiting intrinsic infor...
This study focuses on an alignment-free sequence comparison method: the number of words of length k ...