It is widely accepted that (1) the natural or folded state of proteins is a global energy minimum, and (2) in most cases proteins fold to a unique state determined by their amino acid sequence. The H-P (hydrophobic-hydrophilic) model is a simple combinatorial model designed to answer qualitative questions about the protein folding process. In this paper we consider a problem suggested by Brian Hayes in 1998: what proteins in the two-dimensional H-P model have unique optimal (minimum energy) foldings? In particular, we prove that there are closed chains of monomers (amino acids) with this property for all (even) lengths; and that there are open monomer chains with this property for all lengths divisible by four
A reduced protein model with five to six atoms per amino acid and five amino acid types is developed...
The figure-to-structure maps for all uniquely folding sequences of short hydrophobic polar (HP) mode...
The protein folding problem is a fundamental problem in computational molecular biology and biochemi...
AbstractIt is widely accepted that (1) the natural or folded state of proteins is a global energy mi...
We consider whether or not protein chains in the HP model have unique or few optimal foldings. We so...
[[abstract]]©2006-We consider whether or not protein chains in the HP model have unique or few optim...
We show that the protein folding problem in the two-dimensional H-P model is NP-complete. 1 Introduc...
We recently introduced a physical model [T.X. Hoang, A. Trovato, F. Seno, J.R. Banavar, A. Maritan, ...
The protein folding problem is addressed focussing on the hydro- phobicity patterns in the amino aci...
We study folding algorithms in the two-dimensional Hydrophobic-Hydrophilic model (2D HP model) for p...
The globally minimum energy configurations of simpleHPlatticemodels (which use only two amino acid t...
Taking protein G with 56 residues for a case study, we investigate the mechanism of protein folding....
This research shows optimization approaches to protein folding. The protein folding problem is to pr...
The notion of optimization is inherent in protein design. A long linear chain of twenty types of ami...
The folding behaviour is investigated of some sequences of 36 monomers with dierent proportions of h...
A reduced protein model with five to six atoms per amino acid and five amino acid types is developed...
The figure-to-structure maps for all uniquely folding sequences of short hydrophobic polar (HP) mode...
The protein folding problem is a fundamental problem in computational molecular biology and biochemi...
AbstractIt is widely accepted that (1) the natural or folded state of proteins is a global energy mi...
We consider whether or not protein chains in the HP model have unique or few optimal foldings. We so...
[[abstract]]©2006-We consider whether or not protein chains in the HP model have unique or few optim...
We show that the protein folding problem in the two-dimensional H-P model is NP-complete. 1 Introduc...
We recently introduced a physical model [T.X. Hoang, A. Trovato, F. Seno, J.R. Banavar, A. Maritan, ...
The protein folding problem is addressed focussing on the hydro- phobicity patterns in the amino aci...
We study folding algorithms in the two-dimensional Hydrophobic-Hydrophilic model (2D HP model) for p...
The globally minimum energy configurations of simpleHPlatticemodels (which use only two amino acid t...
Taking protein G with 56 residues for a case study, we investigate the mechanism of protein folding....
This research shows optimization approaches to protein folding. The protein folding problem is to pr...
The notion of optimization is inherent in protein design. A long linear chain of twenty types of ami...
The folding behaviour is investigated of some sequences of 36 monomers with dierent proportions of h...
A reduced protein model with five to six atoms per amino acid and five amino acid types is developed...
The figure-to-structure maps for all uniquely folding sequences of short hydrophobic polar (HP) mode...
The protein folding problem is a fundamental problem in computational molecular biology and biochemi...