This paper introduces a powerful novel sequencer for controlling computational machines and for structured DMA (direct memory access) applications. It is mainly focused on applications using 2-dimensional memory organization, where most inherent speed-up is obtained thereof. A classification scheme of computational sequencing patterns and storage schemes is derived. In the context of application specific computing the paper illustrates its usefulness especially for data sequencing- recalling examples hereafter published earlier, as far as needed for completeness. The paper also discusses, how the new sequencer hardware provides substantial speed-up compared to traditional sequencing hardware use. 1
In multiplexed sequencing, the identification of DNA sequencing barcodes can effectively reduce the ...
Abstract—Recent progress in DNA sequencing technology has yielded a new class of devices that allow ...
Biological sequence comparison is a time consuming task on a Von Neuman computer. The addition of de...
This paper introduces a powerful novel sequencer hardware for controlling computational machines and...
Computer aided sequence analysis is a critical aspect of current bi-ological research. Sequence info...
We have designed a special hardware board to calculate optimal alignments of two sequences based on ...
This paper presents a high performance systolic array (SA) core architecture design for Deoxyribonuc...
Bioinformatics is one of the emerging trends in today’s world. The major part of bioinformatics is d...
The speed of the new DNA sequencing techniques has c rea ted a need for computer programs to handle ...
This paper presents a sequencer that accelerates matrix algorithms arising naturally in many multime...
Abstract — Comparing genetic sequences is a well-known prob-lem in bioinformatics. Newly determined ...
Sequence alignment is a fundamentally memory bound computation whose performance in modern systems i...
Accessing the memory efficiently to keep up with the data processing rate is a well known problem in...
ticular biological sequences. However, the requirements to process the biological data performance. ...
Pattern matching forms the core of many applications and contributes to a significant fraction of th...
In multiplexed sequencing, the identification of DNA sequencing barcodes can effectively reduce the ...
Abstract—Recent progress in DNA sequencing technology has yielded a new class of devices that allow ...
Biological sequence comparison is a time consuming task on a Von Neuman computer. The addition of de...
This paper introduces a powerful novel sequencer hardware for controlling computational machines and...
Computer aided sequence analysis is a critical aspect of current bi-ological research. Sequence info...
We have designed a special hardware board to calculate optimal alignments of two sequences based on ...
This paper presents a high performance systolic array (SA) core architecture design for Deoxyribonuc...
Bioinformatics is one of the emerging trends in today’s world. The major part of bioinformatics is d...
The speed of the new DNA sequencing techniques has c rea ted a need for computer programs to handle ...
This paper presents a sequencer that accelerates matrix algorithms arising naturally in many multime...
Abstract — Comparing genetic sequences is a well-known prob-lem in bioinformatics. Newly determined ...
Sequence alignment is a fundamentally memory bound computation whose performance in modern systems i...
Accessing the memory efficiently to keep up with the data processing rate is a well known problem in...
ticular biological sequences. However, the requirements to process the biological data performance. ...
Pattern matching forms the core of many applications and contributes to a significant fraction of th...
In multiplexed sequencing, the identification of DNA sequencing barcodes can effectively reduce the ...
Abstract—Recent progress in DNA sequencing technology has yielded a new class of devices that allow ...
Biological sequence comparison is a time consuming task on a Von Neuman computer. The addition of de...