Estimated gene trees for simulated dataset with high ILS. For each set of gene trees (200 genes), one species has been pruned and then placed back using EPA-ng. The number in folder name, e.g. sp100 is the label of species being pruned and then placed back
Simulation of 100 gene trees from a pre-specified species tree to analyze the relationship between a...
Zip file of 370 rooted bootstrap gene trees. Each file contains 100 bootstrap replicates of each gen...
A simulated dataset based on Song et al 2012 mammals phylogeny. This file includes model species tre...
Estimated gene trees for simulated dataset with low ILS. For each set of gene trees (200 genes), one...
Estimated gene trees for the three model conditions with speciation rate of 0.000001. There are thre...
The zip file contains all the bootstrap gene files. There are 199 files (one for each gene) with 50...
Backbone trees used for ordered placement for simulated dataset with 201 species trees, which are es...
The zip file contains all the bootstrap gene files. There are 170 files (one for each gene) with 500...
All gene trees generated and used. Includes raw unsmoothed gene trees, and those smoothed using bran...
100 species trees obtained using ASTRAL-II, each one inferred from 345 randomly subsampled gene tree...
Estimated gene trees (part 2 ) for the very large dataset, used for running time analysi
Zip folder containing all 378 estimated gene trees using mrbayes. The gene trees were used for ASTRA...
This is the "pruned" six-gene dataset ("pruned" from Schoch et al. 2009, with Laboulbeniomycetes seq...
Single .tre file containing all 130 nuclear gene trees reduced to 8 major lineages. Inferred using R...
The estimated gene trees and species trees for the three biological datasets are included. The inter...
Simulation of 100 gene trees from a pre-specified species tree to analyze the relationship between a...
Zip file of 370 rooted bootstrap gene trees. Each file contains 100 bootstrap replicates of each gen...
A simulated dataset based on Song et al 2012 mammals phylogeny. This file includes model species tre...
Estimated gene trees for simulated dataset with low ILS. For each set of gene trees (200 genes), one...
Estimated gene trees for the three model conditions with speciation rate of 0.000001. There are thre...
The zip file contains all the bootstrap gene files. There are 199 files (one for each gene) with 50...
Backbone trees used for ordered placement for simulated dataset with 201 species trees, which are es...
The zip file contains all the bootstrap gene files. There are 170 files (one for each gene) with 500...
All gene trees generated and used. Includes raw unsmoothed gene trees, and those smoothed using bran...
100 species trees obtained using ASTRAL-II, each one inferred from 345 randomly subsampled gene tree...
Estimated gene trees (part 2 ) for the very large dataset, used for running time analysi
Zip folder containing all 378 estimated gene trees using mrbayes. The gene trees were used for ASTRA...
This is the "pruned" six-gene dataset ("pruned" from Schoch et al. 2009, with Laboulbeniomycetes seq...
Single .tre file containing all 130 nuclear gene trees reduced to 8 major lineages. Inferred using R...
The estimated gene trees and species trees for the three biological datasets are included. The inter...
Simulation of 100 gene trees from a pre-specified species tree to analyze the relationship between a...
Zip file of 370 rooted bootstrap gene trees. Each file contains 100 bootstrap replicates of each gen...
A simulated dataset based on Song et al 2012 mammals phylogeny. This file includes model species tre...
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