The following repository contains R code for a ecological simulation of biodiversity offsets using neutral theory. Please note that this code only contains the backbone algorithms for the neutral simulation, and has been shortened for illustrative purposes (i.e. the time series is shorter, there are fewer iterations, and the code only simulates the outputs for one combination of parameters). Running this code will take approximately 3-5 minutes of computation time depending on your machine. There is a reporter that counts the number of iterations (Note: this counter does not report the duration of the time-series). The complete simulation as presented in the manuscript took several hours and was run on several cloud-based RStudio servers...
<p>R code to process data files, run analyses, and produce figures for Webb & Mindel, 'Global Patter...
This repository contains the `R` code and some example data (for 7 unique niche samples) to run the ...
The code generates niche overlap matrices and gradient of species evenness, and calculates relative ...
Biodiversity offsets and neutral theoryThe following repository contains R code for a ecological sim...
This file contains the R-code needed to run the simulations in Fig. 4A-F and associated Supplemental...
Here is the code that computed the simulations of bacterial communities assembled by neutral process...
It is shown how to set up, conduct, and analyze large simulation studies with the new R package sims...
The R code file is commented and can be used to simulate data, illustrated in figures in the publica...
These are the R-scripts used for the manuscript "Sources of bias in applying close-kin mark-recaptur...
A simulation study comparing methods to model lagged effects in environmental time series, specifica...
The distribution of abundance amongst species with similar ways of life is a classical problem in ec...
R code used to compute and compare evolutionary diversity metrics in each ecoregion before and after...
Files to accompany "The consequences of checking for zero-inflation and overdispersion in the analys...
R code to simulate the three stochastic ecological models described in the associated paper. Contact...
R code Repository for 'From Mind to Matter: Patterns of Innovation in the Archaeological Record and ...
<p>R code to process data files, run analyses, and produce figures for Webb & Mindel, 'Global Patter...
This repository contains the `R` code and some example data (for 7 unique niche samples) to run the ...
The code generates niche overlap matrices and gradient of species evenness, and calculates relative ...
Biodiversity offsets and neutral theoryThe following repository contains R code for a ecological sim...
This file contains the R-code needed to run the simulations in Fig. 4A-F and associated Supplemental...
Here is the code that computed the simulations of bacterial communities assembled by neutral process...
It is shown how to set up, conduct, and analyze large simulation studies with the new R package sims...
The R code file is commented and can be used to simulate data, illustrated in figures in the publica...
These are the R-scripts used for the manuscript "Sources of bias in applying close-kin mark-recaptur...
A simulation study comparing methods to model lagged effects in environmental time series, specifica...
The distribution of abundance amongst species with similar ways of life is a classical problem in ec...
R code used to compute and compare evolutionary diversity metrics in each ecoregion before and after...
Files to accompany "The consequences of checking for zero-inflation and overdispersion in the analys...
R code to simulate the three stochastic ecological models described in the associated paper. Contact...
R code Repository for 'From Mind to Matter: Patterns of Innovation in the Archaeological Record and ...
<p>R code to process data files, run analyses, and produce figures for Webb & Mindel, 'Global Patter...
This repository contains the `R` code and some example data (for 7 unique niche samples) to run the ...
The code generates niche overlap matrices and gradient of species evenness, and calculates relative ...