Example phylotocol in PDF format. This document describes the analysis plan for a phylogenetic simulation study. Title: An extension of testing 6-state recoding strategies to address substitution bias and compositional heterogeneit
Species-level time-calibrated molecular phylogeny of DNA including the 69 European and North America...
Results of analyses of data sets from Scenario I. (a) Species delimitations estimated by the Bayesia...
Phylogeny used for testing patterns of phylogenetic signal. Modified from Pyron & Wiens 2013. See Ap...
Example phylotocol in PDF format. This document describes the analysis plan for a phylogenetic simul...
Example phylotocol in PDF format. This document describes the analysis plan for an empirical phyloge...
Example phylotocol in markdown format. This document describes the analysis plan for an empirical ph...
The integrity of science requires that the process be based on sound experimental design and objecti...
<p>A diagram of an experimental and analysis workflow for amplicon or shotgun phylogenetic sequencin...
<p>Scenarios discussed in detail in the main text are in bold. Other scenarios are primarily shown i...
Supplementary text describing the novel strategy used by SimPhy to sample lineage counts during the ...
Simulation of 100 gene trees from a pre-specified species tree to analyze the relationship between a...
Table S1: Additional high-lability parameter combinations used in the simulations. Figure S1: Addi...
This is the repository for our publication "Comparative analyses of phenotypic sequences using phylo...
Relative proportions and phylogenetic relationships of the most abundant clones detected in response...
This supplement contains the phylogenies and the simulated family sequences as a test set for phylog...
Species-level time-calibrated molecular phylogeny of DNA including the 69 European and North America...
Results of analyses of data sets from Scenario I. (a) Species delimitations estimated by the Bayesia...
Phylogeny used for testing patterns of phylogenetic signal. Modified from Pyron & Wiens 2013. See Ap...
Example phylotocol in PDF format. This document describes the analysis plan for a phylogenetic simul...
Example phylotocol in PDF format. This document describes the analysis plan for an empirical phyloge...
Example phylotocol in markdown format. This document describes the analysis plan for an empirical ph...
The integrity of science requires that the process be based on sound experimental design and objecti...
<p>A diagram of an experimental and analysis workflow for amplicon or shotgun phylogenetic sequencin...
<p>Scenarios discussed in detail in the main text are in bold. Other scenarios are primarily shown i...
Supplementary text describing the novel strategy used by SimPhy to sample lineage counts during the ...
Simulation of 100 gene trees from a pre-specified species tree to analyze the relationship between a...
Table S1: Additional high-lability parameter combinations used in the simulations. Figure S1: Addi...
This is the repository for our publication "Comparative analyses of phenotypic sequences using phylo...
Relative proportions and phylogenetic relationships of the most abundant clones detected in response...
This supplement contains the phylogenies and the simulated family sequences as a test set for phylog...
Species-level time-calibrated molecular phylogeny of DNA including the 69 European and North America...
Results of analyses of data sets from Scenario I. (a) Species delimitations estimated by the Bayesia...
Phylogeny used for testing patterns of phylogenetic signal. Modified from Pyron & Wiens 2013. See Ap...
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