Relationships of UCE variability (proportion of variable sites per locus (i.e., our metric)) with alternative metrics of information content: a) the proportion of parsimony sites per locus, b) the mean bootstrap support found in corresponding gene trees, and c) the proportion of gene tree nodes resolved with >70% bootstrap support
Appendix S13. Correlations of branch lengths as inferred with the 2,993-gene (without CroCo) versus ...
<p><b>Supplementary Figure 1.</b> Linkage disequilibrium plots for the top ten ranked loci according...
<p>Averages of genetic parameters per locus for trees from coastal Ecuador (Nacional cultivar) and t...
FIGURE S4. Estimates of gene trees for individual UCEs are poorly resolved. Box plot showing the num...
Results of species tree analyses (both bootstraps and summarized tree) using PhyML gene trees as inp...
Histograms depicting variation across ultraconserved elements (UCEs) generated for this study. (A–C)...
<p>Histograms showing the frequency of support (bootstrap or concordance factor) values in the (A) b...
<p>(<b>A</b>) SE are less constraint compared to UCEs. Cumulative distribution plots of phyloP score...
Excel file containing information on each UCE locus used in this study. This information includes: l...
<p>Left: relationship between root-to-tip variance and tree length for simulated (<i>clock</i> and <...
Abstract.—We have investigated the effects of different among-site rate variation models on the esti...
<p>Positively selected sites were determined by MEME analysis; trees are available in <a href="http:...
FIGURE S3. Performance of the maximum parsimony (MP) criterion for phylogenetic estimation with UCE ...
4 pages, 1 article*On the Possibility of Exploiting Intra-Row Correlations to Estimate Genetic and E...
Spearman's ρ between the calculated CUB of 3740 genes in the E. coli genome using various metrics. A...
Appendix S13. Correlations of branch lengths as inferred with the 2,993-gene (without CroCo) versus ...
<p><b>Supplementary Figure 1.</b> Linkage disequilibrium plots for the top ten ranked loci according...
<p>Averages of genetic parameters per locus for trees from coastal Ecuador (Nacional cultivar) and t...
FIGURE S4. Estimates of gene trees for individual UCEs are poorly resolved. Box plot showing the num...
Results of species tree analyses (both bootstraps and summarized tree) using PhyML gene trees as inp...
Histograms depicting variation across ultraconserved elements (UCEs) generated for this study. (A–C)...
<p>Histograms showing the frequency of support (bootstrap or concordance factor) values in the (A) b...
<p>(<b>A</b>) SE are less constraint compared to UCEs. Cumulative distribution plots of phyloP score...
Excel file containing information on each UCE locus used in this study. This information includes: l...
<p>Left: relationship between root-to-tip variance and tree length for simulated (<i>clock</i> and <...
Abstract.—We have investigated the effects of different among-site rate variation models on the esti...
<p>Positively selected sites were determined by MEME analysis; trees are available in <a href="http:...
FIGURE S3. Performance of the maximum parsimony (MP) criterion for phylogenetic estimation with UCE ...
4 pages, 1 article*On the Possibility of Exploiting Intra-Row Correlations to Estimate Genetic and E...
Spearman's ρ between the calculated CUB of 3740 genes in the E. coli genome using various metrics. A...
Appendix S13. Correlations of branch lengths as inferred with the 2,993-gene (without CroCo) versus ...
<p><b>Supplementary Figure 1.</b> Linkage disequilibrium plots for the top ten ranked loci according...
<p>Averages of genetic parameters per locus for trees from coastal Ecuador (Nacional cultivar) and t...
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