NSP306_trifida_v3.hc.gene_models.cdna.fa

List of most expressed genes at 25°C and their corresponding FPKM values.

Xosé M. Matanza (5768111)
Carlos R. Osorio (1456402)

December 2018

FPKM values shown correspond to mean values of the three biological replicates.</p

cal_hc_repr_gene_models.rmscaff.gff3

Genevieve M. Hoopes (5014733)
John P. Hamilton (108011)
Jeongwoon Kim (846830)
Dongyan Zhao (515115)
Krystle Wiegert-Rininger (3443270)
Emily Crisovan (3243993)
C. Robin Buell (108039)

March 2018

Generic feature format (gff3) of representative models for high-confidence genes in C. gigante

P. equestris genome gene models

Niu, Shan-Ce
Xu, Qing
Zhang, Guo-Qiang
Zhang, Yong-Qiang
Tsai, Wen-Chieh
Hsu, Jui-Ling
Liang, Chieh-Kai
Luo, Yi-Bo
Liu, Zhong-Jian

September 2016

The P. equestris genome gene models contain predicted coding sequence, proteins and gff format fil

NSP323_triloba_v3.hc.gene_models.pep.fa

Wu, Shan
Lau, Kin H.
Cao, Qinghe
Hamilton, John P.
Sun, Honghe
Zhou, Chenxi
Eserman, Lauren
Gemenet, Dorcus
Olukolu, Bode
Wang, Haiyan
Crisovan, Emily
Godden, Grant T.
Jiao, Chen
Wang, Xin
Kitavi, Mercy
Manrique-Carpintero, Norma
Vaillancourt, Brieanne
Wiegert-Rininger, Krystle
Yang, Xinsun
Bao, Kan
Zheng, Yi
Schaff, Jennifer
Kreuze, Jan
Gruneberg, Wolfgang
Khan, Awais
Ghislain, Marc
Ma, Daifu
Jiang, Jiming
Mwanga, Robert O.M.
Leebens-Mack, Jim
Coin, Lachlan J.M.
Yencho, G. Craig
Buell, C. Robin
Fei, Zhangjun

November 2018

Amino acid sequences corresponding to the high confidence gene model coding sequences

I_trifida_NSP306_FPKM_expression_matrix_v3_anno.xlsx

Wu, Shan
Lau, Kin H.
Cao, Qinghe
Hamilton, John P.
Sun, Honghe
Zhou, Chenxi
Eserman, Lauren
Gemenet, Dorcus
Olukolu, Bode
Wang, Haiyan
Crisovan, Emily
Godden, Grant T.
Jiao, Chen
Wang, Xin
Kitavi, Mercy
Manrique-Carpintero, Norma
Vaillancourt, Brieanne
Wiegert-Rininger, Krystle
Yang, Xinsun
Bao, Kan
Zheng, Yi
Schaff, Jennifer
Kreuze, Jan
Gruneberg, Wolfgang
Khan, Awais
Ghislain, Marc
Ma, Daifu
Jiang, Jiming
Mwanga, Robert O.M.
Leebens-Mack, Jim
Coin, Lachlan J.M.
Yencho, G. Craig
Buell, C. Robin
Fei, Zhangjun

November 2018

FPKM values of v3 high confidence gene models for 8 I. trifida RNA-seq libraries (callus_flower, cal...

I_triloba_NSP323_FPKM_expression_matrix_v3_anno.xlsx

Wu, Shan
Lau, Kin H.
Cao, Qinghe
Hamilton, John P.
Sun, Honghe
Zhou, Chenxi
Eserman, Lauren
Gemenet, Dorcus
Olukolu, Bode
Wang, Haiyan
Crisovan, Emily
Godden, Grant T.
Jiao, Chen
Wang, Xin
Kitavi, Mercy
Manrique-Carpintero, Norma
Vaillancourt, Brieanne
Wiegert-Rininger, Krystle
Yang, Xinsun
Bao, Kan
Zheng, Yi
Schaff, Jennifer
Kreuze, Jan
Gruneberg, Wolfgang
Khan, Awais
Ghislain, Marc
Ma, Daifu
Jiang, Jiming
Mwanga, Robert O.M.
Leebens-Mack, Jim
Coin, Lachlan J.M.
Yencho, G. Craig
Buell, C. Robin
Fei, Zhangjun

November 2018

FPKM values of v3 high confidence gene models for 6 I. triloba RNA-seq libraries (flower, flowerbud,...

I_trifida_NSP306_stress_FPKM_expression_matrix_v3_anno.xlsx

Wu, Shan
Lau, Kin H.
Cao, Qinghe
Hamilton, John P.
Sun, Honghe
Zhou, Chenxi
Eserman, Lauren
Gemenet, Dorcus
Olukolu, Bode
Wang, Haiyan
Crisovan, Emily
Godden, Grant T.
Jiao, Chen
Wang, Xin
Kitavi, Mercy
Manrique-Carpintero, Norma
Vaillancourt, Brieanne
Wiegert-Rininger, Krystle
Yang, Xinsun
Bao, Kan
Zheng, Yi
Schaff, Jennifer
Kreuze, Jan
Gruneberg, Wolfgang
Khan, Awais
Ghislain, Marc
Ma, Daifu
Jiang, Jiming
Mwanga, Robert O.M.
Leebens-Mack, Jim
Coin, Lachlan J.M.
Yencho, G. Craig
Buell, C. Robin
Fei, Zhangjun

November 2018

FPKM values of v3 high confidence gene models for 15 I. trifida abiotic and biotic stress RNA-seq li...

pasa_m6.hc.gene_models.repr.pep.fa

Leisner, Courtney P.
Hamilton, John P.
Crisovan, Emily
Norma, Manrique-Carpintero
Marand, Alexandre P.
Newton, Linsey
Pham, Gina M.
Jiang, Jiming
Douches, David S.
Jansky, Shelley H.
Buell, C. Robin

February 2018

Protein sequences of representative models of high-confidence genes in S. chacoense M

cal_hc_gene_models.rmscaff.repr.pep.fa

Genevieve M. Hoopes (5014733)
John P. Hamilton (108011)
Jeongwoon Kim (846830)
Dongyan Zhao (515115)
Krystle Wiegert-Rininger (3443270)
Emily Crisovan (3243993)
C. Robin Buell (108039)

March 2018

Protein sequences of representative models for high-confidence genes in C. gigante

Distribution of top 5 N30 RNA sequences for CEA, CA50 and CA72-4 identified by HTS.

Qing Pan (138325)
Carmen O. K. Law (3639382)
Mingo M. H. Yung (109243)
K. C. Han (5843156)
Yuen Lam Pon (5843159)
Terrence Chi Kong Lau (5843162)

October 2018

Distribution of top 5 N30 RNA sequences for CEA, CA50 and CA72-4 identified by HTS.</p

cac_hc_gene_models.repr.pep.fa

Zhao, Dongyan
Hamilton, John P.
Pham, Gina M.
Crisovan, Emily
Wiegert-Rininger, Krystle
Vaillancourt, Brieanne
DellaPenna, Dean
Buell, C. Robin

July 2017

Protein sequences of representative models of high-confidence genes in C. acuminat

3-gene_dataset.nex

Danny Haelewaters (4475131)

June 2018

This is the three-gene input dataset (NEXUS format) used for Maximum Likelihood analysis and Bayesia...

Pseudo-nitzschia multistriata gene models

Ferrante Maria Immacolata
Basu Swaraj
Mapleson Daniel
Sanges Remo

April 2017

The resource contains fasta files with the Pseudo-nitzschia multistriata gene models and proteins, P...

m6.hc.gene_models.all_chrs_corrected.gff3

Leisner, Courtney P.
Hamilton, John P.
Crisovan, Emily
Manrique-Carpintero, Norma C
Marand, Alexandre P.
Newton, Linsey
Pham, Gina M.
Jiang, Jiming
Douches, David S.
Jansky, Shelley H.
Buell, C. Robin

January 2019

Generic feature format file (gff3) of high-confidence genes in S. chacoense M6, including ChrU

m6.hc.gene_models.chr.gff3

Leisner, Courtney P.
Hamilton, John P.
Crisovan, Emily
Norma, Manrique-Carpintero
Marand, Alexandre P.
Newton, Linsey
Pham, Gina M.
Jiang, Jiming
Douches, David S.
Jansky, Shelley H.
Buell, C. Robin

February 2018

Generic feature format file (gff3) of high-confidence genes in S. chacoense M6 (Corrected version as...

List of most expressed genes at 25°C and their corresponding FPKM values.

Xosé M. Matanza (5768111)
Carlos R. Osorio (1456402)

December 2018

FPKM values shown correspond to mean values of the three biological replicates.</p

cal_hc_repr_gene_models.rmscaff.gff3

Genevieve M. Hoopes (5014733)
John P. Hamilton (108011)
Jeongwoon Kim (846830)
Dongyan Zhao (515115)
Krystle Wiegert-Rininger (3443270)
Emily Crisovan (3243993)
C. Robin Buell (108039)

March 2018

Generic feature format (gff3) of representative models for high-confidence genes in C. gigante

P. equestris genome gene models

Niu, Shan-Ce
Xu, Qing
Zhang, Guo-Qiang
Zhang, Yong-Qiang
Tsai, Wen-Chieh
Hsu, Jui-Ling
Liang, Chieh-Kai
Luo, Yi-Bo
Liu, Zhong-Jian

September 2016

The P. equestris genome gene models contain predicted coding sequence, proteins and gff format fil

NSP323_triloba_v3.hc.gene_models.pep.fa

Wu, Shan
Lau, Kin H.
Cao, Qinghe
Hamilton, John P.
Sun, Honghe
Zhou, Chenxi
Eserman, Lauren
Gemenet, Dorcus
Olukolu, Bode
Wang, Haiyan
Crisovan, Emily
Godden, Grant T.
Jiao, Chen
Wang, Xin
Kitavi, Mercy
Manrique-Carpintero, Norma
Vaillancourt, Brieanne
Wiegert-Rininger, Krystle
Yang, Xinsun
Bao, Kan
Zheng, Yi
Schaff, Jennifer
Kreuze, Jan
Gruneberg, Wolfgang
Khan, Awais
Ghislain, Marc
Ma, Daifu
Jiang, Jiming
Mwanga, Robert O.M.
Leebens-Mack, Jim
Coin, Lachlan J.M.
Yencho, G. Craig
Buell, C. Robin
Fei, Zhangjun

November 2018

Amino acid sequences corresponding to the high confidence gene model coding sequences

I_trifida_NSP306_FPKM_expression_matrix_v3_anno.xlsx

Wu, Shan
Lau, Kin H.
Cao, Qinghe
Hamilton, John P.
Sun, Honghe
Zhou, Chenxi
Eserman, Lauren
Gemenet, Dorcus
Olukolu, Bode
Wang, Haiyan
Crisovan, Emily
Godden, Grant T.
Jiao, Chen
Wang, Xin
Kitavi, Mercy
Manrique-Carpintero, Norma
Vaillancourt, Brieanne
Wiegert-Rininger, Krystle
Yang, Xinsun
Bao, Kan
Zheng, Yi
Schaff, Jennifer
Kreuze, Jan
Gruneberg, Wolfgang
Khan, Awais
Ghislain, Marc
Ma, Daifu
Jiang, Jiming
Mwanga, Robert O.M.
Leebens-Mack, Jim
Coin, Lachlan J.M.
Yencho, G. Craig
Buell, C. Robin
Fei, Zhangjun

November 2018

FPKM values of v3 high confidence gene models for 8 I. trifida RNA-seq libraries (callus_flower, cal...

I_triloba_NSP323_FPKM_expression_matrix_v3_anno.xlsx

Wu, Shan
Lau, Kin H.
Cao, Qinghe
Hamilton, John P.
Sun, Honghe
Zhou, Chenxi
Eserman, Lauren
Gemenet, Dorcus
Olukolu, Bode
Wang, Haiyan
Crisovan, Emily
Godden, Grant T.
Jiao, Chen
Wang, Xin
Kitavi, Mercy
Manrique-Carpintero, Norma
Vaillancourt, Brieanne
Wiegert-Rininger, Krystle
Yang, Xinsun
Bao, Kan
Zheng, Yi
Schaff, Jennifer
Kreuze, Jan
Gruneberg, Wolfgang
Khan, Awais
Ghislain, Marc
Ma, Daifu
Jiang, Jiming
Mwanga, Robert O.M.
Leebens-Mack, Jim
Coin, Lachlan J.M.
Yencho, G. Craig
Buell, C. Robin
Fei, Zhangjun

November 2018

FPKM values of v3 high confidence gene models for 6 I. triloba RNA-seq libraries (flower, flowerbud,...

I_trifida_NSP306_stress_FPKM_expression_matrix_v3_anno.xlsx

Wu, Shan
Lau, Kin H.
Cao, Qinghe
Hamilton, John P.
Sun, Honghe
Zhou, Chenxi
Eserman, Lauren
Gemenet, Dorcus
Olukolu, Bode
Wang, Haiyan
Crisovan, Emily
Godden, Grant T.
Jiao, Chen
Wang, Xin
Kitavi, Mercy
Manrique-Carpintero, Norma
Vaillancourt, Brieanne
Wiegert-Rininger, Krystle
Yang, Xinsun
Bao, Kan
Zheng, Yi
Schaff, Jennifer
Kreuze, Jan
Gruneberg, Wolfgang
Khan, Awais
Ghislain, Marc
Ma, Daifu
Jiang, Jiming
Mwanga, Robert O.M.
Leebens-Mack, Jim
Coin, Lachlan J.M.
Yencho, G. Craig
Buell, C. Robin
Fei, Zhangjun

November 2018

FPKM values of v3 high confidence gene models for 15 I. trifida abiotic and biotic stress RNA-seq li...

pasa_m6.hc.gene_models.repr.pep.fa

Leisner, Courtney P.
Hamilton, John P.
Crisovan, Emily
Norma, Manrique-Carpintero
Marand, Alexandre P.
Newton, Linsey
Pham, Gina M.
Jiang, Jiming
Douches, David S.
Jansky, Shelley H.
Buell, C. Robin

February 2018

Protein sequences of representative models of high-confidence genes in S. chacoense M

cal_hc_gene_models.rmscaff.repr.pep.fa

Genevieve M. Hoopes (5014733)
John P. Hamilton (108011)
Jeongwoon Kim (846830)
Dongyan Zhao (515115)
Krystle Wiegert-Rininger (3443270)
Emily Crisovan (3243993)
C. Robin Buell (108039)

March 2018

Protein sequences of representative models for high-confidence genes in C. gigante

Distribution of top 5 N30 RNA sequences for CEA, CA50 and CA72-4 identified by HTS.

Qing Pan (138325)
Carmen O. K. Law (3639382)
Mingo M. H. Yung (109243)
K. C. Han (5843156)
Yuen Lam Pon (5843159)
Terrence Chi Kong Lau (5843162)

October 2018

Distribution of top 5 N30 RNA sequences for CEA, CA50 and CA72-4 identified by HTS.</p

cac_hc_gene_models.repr.pep.fa

Zhao, Dongyan
Hamilton, John P.
Pham, Gina M.
Crisovan, Emily
Wiegert-Rininger, Krystle
Vaillancourt, Brieanne
DellaPenna, Dean
Buell, C. Robin

July 2017

Protein sequences of representative models of high-confidence genes in C. acuminat

3-gene_dataset.nex

Danny Haelewaters (4475131)

June 2018

This is the three-gene input dataset (NEXUS format) used for Maximum Likelihood analysis and Bayesia...

Pseudo-nitzschia multistriata gene models

Ferrante Maria Immacolata
Basu Swaraj
Mapleson Daniel
Sanges Remo

April 2017

The resource contains fasta files with the Pseudo-nitzschia multistriata gene models and proteins, P...

m6.hc.gene_models.all_chrs_corrected.gff3

Leisner, Courtney P.
Hamilton, John P.
Crisovan, Emily
Manrique-Carpintero, Norma C
Marand, Alexandre P.
Newton, Linsey
Pham, Gina M.
Jiang, Jiming
Douches, David S.
Jansky, Shelley H.
Buell, C. Robin

January 2019

Generic feature format file (gff3) of high-confidence genes in S. chacoense M6, including ChrU

m6.hc.gene_models.chr.gff3

Leisner, Courtney P.
Hamilton, John P.
Crisovan, Emily
Norma, Manrique-Carpintero
Marand, Alexandre P.
Newton, Linsey
Pham, Gina M.
Jiang, Jiming
Douches, David S.
Jansky, Shelley H.
Buell, C. Robin

February 2018

Generic feature format file (gff3) of high-confidence genes in S. chacoense M6 (Corrected version as...

List of most expressed genes at 25°C and their corresponding FPKM values.

Xosé M. Matanza (5768111)
Carlos R. Osorio (1456402)

December 2018

FPKM values shown correspond to mean values of the three biological replicates.</p

cal_hc_repr_gene_models.rmscaff.gff3

Genevieve M. Hoopes (5014733)
John P. Hamilton (108011)
Jeongwoon Kim (846830)
Dongyan Zhao (515115)
Krystle Wiegert-Rininger (3443270)
Emily Crisovan (3243993)
C. Robin Buell (108039)

March 2018

Generic feature format (gff3) of representative models for high-confidence genes in C. gigante

P. equestris genome gene models

Niu, Shan-Ce
Xu, Qing
Zhang, Guo-Qiang
Zhang, Yong-Qiang
Tsai, Wen-Chieh
Hsu, Jui-Ling
Liang, Chieh-Kai
Luo, Yi-Bo
Liu, Zhong-Jian

September 2016

The P. equestris genome gene models contain predicted coding sequence, proteins and gff format fil

NSP306_trifida_v3.hc.gene_models.cdna.fa

Abstract

Extracted data

NSP306_trifida_v3.hc.gene_models.cdna.fa

Abstract

Extracted data

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