Gene alignments

FASTA format alignments for 151 protein-coding using three assembly methods: consensus, ambiguity (iupac), and allele phasing. Alleles for each individual are annotated as _h1 or _h2; for SVDQuartets all SNPs are randomly assigned to _h1 or _h2. For the alleles dataset, alleles have been phased within the longest phaseable block. Outside this block, ambiguity codes are retained. Also contains partition files for RAxML, with each gene partitioned by codon position