Appendix 18 - Credible set of speciation shifts in Parnassiinae

Appendix F. A table showing model-averaged transition probability estimates between breeding and nonbreeding states within and between populations of Ambystoma tigrinum tigrinum.

Don R. Church (2915162)
Larissa L. Bailey (414449)
Henry M. Wilbur (2915159)
William L. Kendall (2910083)
James E. Hines (423739)

August 2016

A table showing model-averaged transition probability estimates between breeding and nonbreeding sta...

SFigS4_Length_Phylorate_PA

Law, Christopher
Slater, Graham
Mehta, Rita

May 2017

Supplementary Figure S4. Phylorate plot of phenotypic (body length) evolution rates through time usi...

SUPPLEMENTARY APPENDIX 10

February 2018

Species delimitations estimated by bPTP-h for data sets from Scenario II. Panels show nine combinati...

Appendix 19 - BAMM-like RevBayes analyses

Fabien L. Condamine (147468)
Jonathan Rolland (515851)
Sebastian Höhna (506055)
Felix A. H. Sperling (202435)
Isabel Sanmartín (3309978)

March 2018

Rate-through-time plot as inferred with RevBayes for Parnassiinae. Net diversification rates signifi...

Configuration shifts from the 95% credible set sampled by BAMM from the Angraecinae phylogeny and evolutionary rates through time.

Herinandrianina N. Andriananjamanantsoa (3138567)
Shannon Engberg (3138561)
Edward E. Louis Jr (3138564)
Luc Brouillet (724874)

September 2016

<p>The intensity of colors on branches reflects the relative probability density of speciation rates...

Figure S4 - Credible set of diversification shifts in Dictyoptera

Legendre, Frédéric
Condamine, Fabien

February 2018

Figure S4. Credible set of configuration shifts for net diversification of Dictyoptera inferred with...

Table S1 - BAMM analyses

Frédéric Legendre (474897)
Fabien Condamine (4357978)

March 2018

Summary of diversification models in BAMM compared across a gradient of values for the Poison proces...

Fig. S4 - BAMM speciation

Harrington, Sean
Reeder, Tod W.

October 2016

Figure S4. Maximum shift credibility tree from BAMM showing diversification rate shifts across Squam...

Figure S3 - Marginal probabilities and marginal odds ratios of the BAMM run

Frédéric Legendre (474897)
Fabien Condamine (4357978)

March 2018

Figure S3. Two different metrics of weighing the relative evidence of a diversification shift occurr...

Appendix 10 - Time-calibrated trees of Parnassiinae

Fabien L. Condamine (147468)
Jonathan Rolland (515851)
Sebastian Höhna (506055)
Felix A. H. Sperling (202435)
Isabel Sanmartín (3309978)

March 2018

Time-calibrated trees of Parnassiinae as estimated by BEAST following four different analyses

Appendix 17 - BAMM analyses

Fabien L. Condamine (147468)
Jonathan Rolland (515851)
Sebastian Höhna (506055)
Felix A. H. Sperling (202435)
Isabel Sanmartín (3309978)

March 2018

Summary of diversification models in BAMM compared across a gradient of values for the Poison proces...

Appendix 20 - CoMET analyses

Condamine, Fabien L.
Rolland, Jonathan
Höhna, Sebastian
Sperling, Felix A. H.
Sanmartín, Isabel

February 2018

Rate-through-time plot as inferred with CoMET for Parnassiinae. The analyses detected one possible m...

Appendix 14

Emmanuel F. A. Toussaint (147463)
Fabien L. Condamine (147468)
Oliver Hawlitschek (139549)
Chris H. S. Watts (3313875)
Lars Hendrich (230658)
Michael Balke (188490)

December 2016

Plots of resulting diversity trajectory in the genus Paroster as reconstructed from the best-fit mod...

Appendix C. Summary of models used to test for parsimony in the probability of detection conditional on breeding state (p) and the probability of correctly classifying an individual Snail Kite's breeding state given it was detected (δ).

Brian E. Reichert (2924904)
Christopher E. Cattau (2924907)
Robert J. Fletcher Jr. (431571)
William L. Kendall (2910083)
Wiley M. Kitchens (2924901)

August 2016

Summary of models used to test for parsimony in the probability of detection conditional on breeding...

Appendix 22 - Relation butterfly diversification and host-plant diversity

Condamine, Fabien L.
Rolland, Jonathan
Höhna, Sebastian
Sperling, Felix A. H.
Sanmartín, Isabel

February 2018

Correlation (linear regression) between speciation rates as inferred with MuSSE (a) and BAMM (b) and...

Appendix F. A table showing model-averaged transition probability estimates between breeding and nonbreeding states within and between populations of Ambystoma tigrinum tigrinum.

Don R. Church (2915162)
Larissa L. Bailey (414449)
Henry M. Wilbur (2915159)
William L. Kendall (2910083)
James E. Hines (423739)

August 2016

A table showing model-averaged transition probability estimates between breeding and nonbreeding sta...

SFigS4_Length_Phylorate_PA

Law, Christopher
Slater, Graham
Mehta, Rita

May 2017

Supplementary Figure S4. Phylorate plot of phenotypic (body length) evolution rates through time usi...

SUPPLEMENTARY APPENDIX 10

February 2018

Species delimitations estimated by bPTP-h for data sets from Scenario II. Panels show nine combinati...

Appendix 19 - BAMM-like RevBayes analyses

Fabien L. Condamine (147468)
Jonathan Rolland (515851)
Sebastian Höhna (506055)
Felix A. H. Sperling (202435)
Isabel Sanmartín (3309978)

March 2018

Rate-through-time plot as inferred with RevBayes for Parnassiinae. Net diversification rates signifi...

Configuration shifts from the 95% credible set sampled by BAMM from the Angraecinae phylogeny and evolutionary rates through time.

Herinandrianina N. Andriananjamanantsoa (3138567)
Shannon Engberg (3138561)
Edward E. Louis Jr (3138564)
Luc Brouillet (724874)

September 2016

<p>The intensity of colors on branches reflects the relative probability density of speciation rates...

Figure S4 - Credible set of diversification shifts in Dictyoptera

Legendre, Frédéric
Condamine, Fabien

February 2018

Figure S4. Credible set of configuration shifts for net diversification of Dictyoptera inferred with...

Table S1 - BAMM analyses

Frédéric Legendre (474897)
Fabien Condamine (4357978)

March 2018

Summary of diversification models in BAMM compared across a gradient of values for the Poison proces...

Fig. S4 - BAMM speciation

Harrington, Sean
Reeder, Tod W.

October 2016

Figure S4. Maximum shift credibility tree from BAMM showing diversification rate shifts across Squam...

Figure S3 - Marginal probabilities and marginal odds ratios of the BAMM run

Frédéric Legendre (474897)
Fabien Condamine (4357978)

March 2018

Figure S3. Two different metrics of weighing the relative evidence of a diversification shift occurr...

Appendix 10 - Time-calibrated trees of Parnassiinae

Fabien L. Condamine (147468)
Jonathan Rolland (515851)
Sebastian Höhna (506055)
Felix A. H. Sperling (202435)
Isabel Sanmartín (3309978)

March 2018

Time-calibrated trees of Parnassiinae as estimated by BEAST following four different analyses

Appendix 17 - BAMM analyses

Fabien L. Condamine (147468)
Jonathan Rolland (515851)
Sebastian Höhna (506055)
Felix A. H. Sperling (202435)
Isabel Sanmartín (3309978)

March 2018

Summary of diversification models in BAMM compared across a gradient of values for the Poison proces...

Appendix 20 - CoMET analyses

Condamine, Fabien L.
Rolland, Jonathan
Höhna, Sebastian
Sperling, Felix A. H.
Sanmartín, Isabel

February 2018

Rate-through-time plot as inferred with CoMET for Parnassiinae. The analyses detected one possible m...

Appendix 14

Emmanuel F. A. Toussaint (147463)
Fabien L. Condamine (147468)
Oliver Hawlitschek (139549)
Chris H. S. Watts (3313875)
Lars Hendrich (230658)
Michael Balke (188490)

December 2016

Plots of resulting diversity trajectory in the genus Paroster as reconstructed from the best-fit mod...

Appendix C. Summary of models used to test for parsimony in the probability of detection conditional on breeding state (p) and the probability of correctly classifying an individual Snail Kite's breeding state given it was detected (δ).

Brian E. Reichert (2924904)
Christopher E. Cattau (2924907)
Robert J. Fletcher Jr. (431571)
William L. Kendall (2910083)
Wiley M. Kitchens (2924901)

August 2016

Summary of models used to test for parsimony in the probability of detection conditional on breeding...

Appendix 22 - Relation butterfly diversification and host-plant diversity

Condamine, Fabien L.
Rolland, Jonathan
Höhna, Sebastian
Sperling, Felix A. H.
Sanmartín, Isabel

February 2018

Correlation (linear regression) between speciation rates as inferred with MuSSE (a) and BAMM (b) and...

Appendix F. A table showing model-averaged transition probability estimates between breeding and nonbreeding states within and between populations of Ambystoma tigrinum tigrinum.

Don R. Church (2915162)
Larissa L. Bailey (414449)
Henry M. Wilbur (2915159)
William L. Kendall (2910083)
James E. Hines (423739)

August 2016

A table showing model-averaged transition probability estimates between breeding and nonbreeding sta...

SFigS4_Length_Phylorate_PA

Law, Christopher
Slater, Graham
Mehta, Rita

May 2017

Supplementary Figure S4. Phylorate plot of phenotypic (body length) evolution rates through time usi...

SUPPLEMENTARY APPENDIX 10

February 2018

Species delimitations estimated by bPTP-h for data sets from Scenario II. Panels show nine combinati...

Appendix 18 - Credible set of speciation shifts in Parnassiinae

Abstract

Extracted data

Appendix 18 - Credible set of speciation shifts in Parnassiinae

Abstract

Extracted data

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