File contents: 1: Two BEAST input files for phylogenetic reconstructions; 2: input file, settings file and sample prob. file for BAMM analysis; 3: R script for downloading COI sequences from genbank; 4: R script for processing the 305 species tree (data extraction and pruning to genus tree); 5: R script for prepping 602 spp tree for BAMM and analyses of BAMM output files; 6: R scripts for SLOUCH analyse
This file contains representative R scripts used to analyze behavioral and morphological data
Here we describe the various R scripts, input & output data files created for this project. Collecti...
besttree_icz022.tree = maximum clade credibility tree from best MrBayes run; cottoidei.run1.t = post...
All selection scan and differential expression results (PAML results, HyPhy results, Sleuth results)...
This zip file contains the microsatellite data, phenotypic data and R scripts used to conductive all...
This folder contains 5 R scripts for analysis of data in this publication. At the top of each script...
Contains phylogenetic tree files needed to replicate the analyses from the associated R script (R_co...
Supporting files for manuscript "Evolutionary histories of breast cancer and related clones". Conte...
Script for running fitDiscrete using R and the XML file for BEAST analyses, including ancestral reco...
R script that contains all the analyses done in this publication. Refer to the README file for detai...
<h2>File List</h2><div> <p><a href="ChesMMAP_Analysis.R">ChesMMAP_Analysis.R</...
R script used in analyzing the attached data files. The script contains 4 sections representing 4 se...
R documents (.R files) and associated data files used for Bayesian phylogenetic multilevel models. D...
Phylogenetic analyses can provide a wealth of information about the past demography of a population ...
The file "Rscripts.zip" holds seven R scripts used to complete analyses of median first flowering ce...
This file contains representative R scripts used to analyze behavioral and morphological data
Here we describe the various R scripts, input & output data files created for this project. Collecti...
besttree_icz022.tree = maximum clade credibility tree from best MrBayes run; cottoidei.run1.t = post...
All selection scan and differential expression results (PAML results, HyPhy results, Sleuth results)...
This zip file contains the microsatellite data, phenotypic data and R scripts used to conductive all...
This folder contains 5 R scripts for analysis of data in this publication. At the top of each script...
Contains phylogenetic tree files needed to replicate the analyses from the associated R script (R_co...
Supporting files for manuscript "Evolutionary histories of breast cancer and related clones". Conte...
Script for running fitDiscrete using R and the XML file for BEAST analyses, including ancestral reco...
R script that contains all the analyses done in this publication. Refer to the README file for detai...
<h2>File List</h2><div> <p><a href="ChesMMAP_Analysis.R">ChesMMAP_Analysis.R</...
R script used in analyzing the attached data files. The script contains 4 sections representing 4 se...
R documents (.R files) and associated data files used for Bayesian phylogenetic multilevel models. D...
Phylogenetic analyses can provide a wealth of information about the past demography of a population ...
The file "Rscripts.zip" holds seven R scripts used to complete analyses of median first flowering ce...
This file contains representative R scripts used to analyze behavioral and morphological data
Here we describe the various R scripts, input & output data files created for this project. Collecti...
besttree_icz022.tree = maximum clade credibility tree from best MrBayes run; cottoidei.run1.t = post...