Custom pipelines and scripts for the assembly and analysis of cross-species targeted capture dat
Supplementary information 2. Results of off-target sequencing analysis. (PDF 123 kb
Bash scripts used to handle raw sequence data, identify loci, and call genotypes
The file contains the data and trees that result from analyses in which the different Xenotrechus se...
Custom pipelines and scripts for the assembly and analysis of cross-species targeted capture dat
Complete set of probes used for cross-species targeted capture and associated dat
otu_processing.sh pipeline. Contains code for sequence quality control and OTU-picking. (SH 2Â kb
Text document containing an example of the command launched to execute each of the tools. (TXT 2 kb
Scripts used in the development of this manuscript. See Genome_Diagram_Maker/README.txt for usage in...
A1metricTable.txt: GAGE reported assembly evaluation metrics for all Assemblathon1 metassemblies at ...
Zipped folder containing genome assembly, genome annotation file, repeats file, SNP array data set a...
Supplementary Dataset 1. Sequence alignment used for phylogenetic analysis of C3 complement sequence...
Material and details of pipeline configurations. The document describes in detail the material and p...
The content of the package contains 3 Supplementary tables entitled as follows: -Supplementary Fil...
Commands used for the analyses in this study. Note that the original file paths have been retained h...
Intersection of dipteran gene models identified by all four assembly strategies using the 180Â M dat...
Supplementary information 2. Results of off-target sequencing analysis. (PDF 123 kb
Bash scripts used to handle raw sequence data, identify loci, and call genotypes
The file contains the data and trees that result from analyses in which the different Xenotrechus se...
Custom pipelines and scripts for the assembly and analysis of cross-species targeted capture dat
Complete set of probes used for cross-species targeted capture and associated dat
otu_processing.sh pipeline. Contains code for sequence quality control and OTU-picking. (SH 2Â kb
Text document containing an example of the command launched to execute each of the tools. (TXT 2 kb
Scripts used in the development of this manuscript. See Genome_Diagram_Maker/README.txt for usage in...
A1metricTable.txt: GAGE reported assembly evaluation metrics for all Assemblathon1 metassemblies at ...
Zipped folder containing genome assembly, genome annotation file, repeats file, SNP array data set a...
Supplementary Dataset 1. Sequence alignment used for phylogenetic analysis of C3 complement sequence...
Material and details of pipeline configurations. The document describes in detail the material and p...
The content of the package contains 3 Supplementary tables entitled as follows: -Supplementary Fil...
Commands used for the analyses in this study. Note that the original file paths have been retained h...
Intersection of dipteran gene models identified by all four assembly strategies using the 180Â M dat...
Supplementary information 2. Results of off-target sequencing analysis. (PDF 123 kb
Bash scripts used to handle raw sequence data, identify loci, and call genotypes
The file contains the data and trees that result from analyses in which the different Xenotrechus se...
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