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Mitochondrial cytochrome-b sequence alignment

Dufresnes, Christophe
Litvinchuk, Spartak N.
Leuenberger, Julien
Ghali, Karim
Zinenko, Oleksandr
Stöck, Matthias
Perrin, Nicolas

Publication date

May 2016

DOI

10.5061/dryad.vs08j/2

Abstract

Sequence alignment of mitochondrial cytochrome-b (cyt-b), from 407 H. orientalis samples

Extracted data

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Sandoval-Castellanos, Edson
Ehrich, Dorothee
Abramson, Natalia
Nadachowski, Adam
Kalthoff, Daniela
Germonpré, Mietje
Angerbjörn, Anders
Stewart, John R.
Dalén, Love

February 2014

Combined mitochondrial data. Control region: position 1-96; Cytochrome b: position 97-172

Sequence_alignments

Steven M. Van Belleghem (313059)
Dick Roelofs (32180)
Frederik Hendrickx (313060)

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Sequence alignments of Pogonus chalcesu mitochondrial NADP+-dependent isocitrate dehydrogenase (mtId...

Sequence_alignments

Van Belleghem, Steven M.
Roelofs, Dick
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Sequence alignments of Pogonus chalcesu mitochondrial NADP+-dependent isocitrate dehydrogenase (mtId...

Mitochondrial cytochrome-b sequence alignment

Christophe Dufresnes (220868)
Spartak N. Litvinchuk (3244530)
Julien Leuenberger (3265041)
Karim Ghali (3261612)
Oleksandr Zinenko (3265044)
Matthias Stöck (89500)
Nicolas Perrin (220912)

October 2016

Sequence alignment of mitochondrial cytochrome-b (cyt-b), from 407 H. orientalis samples

Mitochondrial_alignments

Rossiter, Stephen J.
Kuo, Hao-Chih
Chen, Shiang-Fan
Fang, Yin-Ping
Flanders, Jon

June 2014

A compressed file containing single-mitochondrial-locus alignments (Cyt-b or COI) for the four Taiwa...

full-cytb dataset

Bagley, Justin C.
Matamoros, Wilfredo
McMahan, Caleb D.
Tobler, Michael
Chakrabarty, Prosanta
Johnson, Jerald B.

August 2016

NEXUS file containing the 'full-cytb' dataset alignment, which includes 408 mtDNA sequences of the m...

Clinostomus_elongatus_cytb_seq_alignment

Serrao, Natasha R.
Reid, Scott
Wilson, Chris C.

September 2017

sequence alignment file of mitochondrial cytochrome b sequences from redside dace (Clinostomus elong...

Mitochondrial_alignments

Stephen J. Rossiter (34551)
Hao-Chih Kuo (3259458)
Shiang-Fan Chen (3259452)
Yin-Ping Fang (198169)
Jon Flanders (101840)

October 2016

A compressed file containing single-mitochondrial-locus alignments (Cyt-b or COI) for the four Taiwa...

Lemmus sequence alignment for the complete dataset (520 bp)

Vendela Lagerholm (3295581)
Edson Sandoval-Castellanos (568927)
Dorothee Ehrich (2794225)
Natalia Abramson (3295578)
Adam Nadachowski (410107)
Daniela Kalthoff (3295575)
Mietje Germonpré (413538)
Anders Angerbjörn (180269)
John R. Stewart (741802)
Love Dalén (568929)

November 2016

Combined mitochondrial data. Control region: position 1-168; Cytochrome b: position 169-520

Lemmus sequence alignment for the complete dataset (520 bp)

Lagerholm, Vendela
Sandoval-Castellanos, Edson
Ehrich, Dorothee
Abramson, Natalia
Nadachowski, Adam
Kalthoff, Daniela
Germonpré, Mietje
Angerbjörn, Anders
Stewart, John R.
Dalén, Love

February 2014

Combined mitochondrial data. Control region: position 1-168; Cytochrome b: position 169-520

CYTB_genotype_alignment

Joana Paupério (3251064)
Jeremy S. Herman (613169)
José Melo-Ferreira (294363)
Maarit Jaarola (613171)
Paulo C. Alves (401761)
Jeremy B. Searle (192893)

October 2016

Alignment of cytochrome b sequences of all individuals used for species tree inference

CYTB_genotype_alignment

Paupério, Joana
Herman, Jeremy S.
Melo-Ferreira, José
Jaarola, Maarit
Alves, Paulo C.
Searle, Jeremy B.

November 2012

Alignment of cytochrome b sequences of all individuals used for species tree inference

Sigmodontinae and Neotominae Mitochondria Cytochrome B alignment

Michaela Bayerlová (833473)
Olivier Missa (3244023)
Natália Martínková (238012)
Nancy R. Irwin (372547)

November 2016

Sigmodontinae and Neotominae Mitochondria Cytochrome B alignment. 523 taxa aligned with Genbank acce...

Sigmodontinae and Neotominae Mitochondria Cytochrome B alignment

Bayerlová, Michaela
Missa, Olivier
Martínková, Natália
Irwin, Nancy R.

June 2012

Sigmodontinae and Neotominae Mitochondria Cytochrome B alignment. 523 taxa aligned with Genbank acce...

Alignment of cyt b

Arley Camargo (3266289)
Mariana Morando (3250290)
Luciano Javier Avila (3266286)
Jack W. Sites Jr. (710756)

October 2016

Text file in nexus format containing the alignment of cytochrome b mtDNA data of the Liolaemus darwi...

Lemmus sequence alignment for the partial dataset (172 bp)

Lagerholm, Vendela
Sandoval-Castellanos, Edson
Ehrich, Dorothee
Abramson, Natalia
Nadachowski, Adam
Kalthoff, Daniela
Germonpré, Mietje
Angerbjörn, Anders
Stewart, John R.
Dalén, Love

February 2014

Combined mitochondrial data. Control region: position 1-96; Cytochrome b: position 97-172

Sequence_alignments

Steven M. Van Belleghem (313059)
Dick Roelofs (32180)
Frederik Hendrickx (313060)

November 2016

Sequence alignments of Pogonus chalcesu mitochondrial NADP+-dependent isocitrate dehydrogenase (mtId...

Sequence_alignments

Van Belleghem, Steven M.
Roelofs, Dick
Hendrickx, Frederik

December 2014

Sequence alignments of Pogonus chalcesu mitochondrial NADP+-dependent isocitrate dehydrogenase (mtId...