SNP data by genotyping by sequnecing in pearl millet germplasm

Upadhyaya, H D

January 2009

At ICRISAT genebank, as part of the Generation Challenge Program (GCP) under project: GCP. (SP1)200...

Number of variants and genotyping rates for SNP datasets generated in this study.

John Soghigian (3418565)
Theodore G. Andreadis (257136)
Goudarz Molaei (790980)

August 2018

Number of variants and genotyping rates for SNP datasets generated in this study.</p

Data from: A high density SNP chip for genotyping great tit (Parus major) populations and its application to studying the genetic architecture of exploration behaviour

Kim, Jun-Mo
Santure, Anna W.
Barton, Henry J.
Quinn, John L.
Cole, Eleanor F.
Visser, Marcel E.
Sheldon, Ben C.
Groenen, Martien A.M.
van Oers, Kees
Slate, Jon

March 2018

High density SNP microarrays (‘SNP chips’) are a rapid, accurate and efficient method for genotyping...

SNP data by genotyping by sequnecing in pearl millet germplasm

Zhenbin Hu (3248133)
Bassirou Mbacké (3248127)
Ramasamy Perumal (3248136)
Mame Codou Guèye (3248130)
Ousmane Sy (3248124)
Sophie Bouchet (177842)
P. V. Vara Prasad (580509)
Geoffrey P. Morris (181709)

October 2016

The upload SNP data, including 83,875 SNPs, was generated by genotyping by sequencing in 500 pearl m...

Table_1_Development of a new AgriSeq 4K mid-density SNP genotyping panel and its utility in pearl millet breeding.xlsx

Janani Semalaiyappan (14079462)
Sivasubramani Selvanayagam (10902291)
Abhishek Rathore (560197)
SK. Gupta (14368725)
Animikha Chakraborty (9742241)
Krishna Reddy Gujjula (9990308)
Suren Haktan (14368728)
Aswini Viswanath (9742244)
Renuka Malipatil (9742247)
Priya Shah (579065)
Mahalingam Govindaraj (6732320)
John Carlos Ignacio (8843531)
Sanjana Reddy (12749300)
Ashok Kumar Singh (9521960)
Nepolean Thirunavukkarasu (196144)

January 2023

Pearl millet is a crucial nutrient-rich staple food in Asia and Africa and adapted to the climate of...

Genotyping-by-Sequencing SNP identification for crops without a reference genome : using transcriptome based mapping as an alternative strategy

Berthouly, Cécile
Mariac, Cédric
Couderc, Marie
Pouzadoux, J.
Floc'h, J. B.
Vigouroux, Yves

January 2016

Next-generation sequencing opens the way for genomic studies of diversity even for non-model crops a...

Genotyping-by-Sequencing SNP Identification for Crops without a Reference Genome: Using Transcriptome Based Mapping as an Alternative Strategy

Berthouly-Salazar, Cécile
Mariac, Cédric
Couderc, Marie
Pouzadoux, Juliette
Floc’h, Jean-Baptiste
Vigouroux, Yves

January 2016

International audienceNext-generation sequencing opens the way for genomic studies of diversity even...

Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-by-sequencing (GBS) approach

Moumouni, K. H.
Kountche, B. A.
Jean, M.
Hash, C. T.
Vigouroux, Yves
Haussmann, B. I. G.
Belzile, F.

January 2015

Pearl millet is the main component of traditional farming systems and a staple grain in the diet of ...

SCAMing: an efficient high throughput approach to discovery and analysis of Snps for genotyping of tropical crop species

Eliott, Frances G
Cordeiro, Giovanni M
Rice, Nicole F
Cronin, James K
Waters, Daniel LE
Bundock, Peter C
Bowen, Stirling
Henry, Robert J

January 2006

Model organisms have well established genetic marker tools. However, genotyping of the wide range of...

Development of a new AgriSeq 4K mid-density SNP genotyping panel and its utility in pearl millet breeding

Semalaiyappan, J
Selvanayagam, S
Rathore, A
Gupta, S K
Chakraborty, A
Gujjula, K R
Haktan, S
Viswanath, A
Malipatil, R
Shah, P
Govindaraj, M
Ignacio, J C
Reddy, S
Singh, A K
Thirunavukkarasu, N

January 2023

Pearl millet is a crucial nutrient-rich staple food in Asia and Africa and adapted to the climate of...

Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies.

Davis Gimode
Damaris A Odeny
Etienne P de Villiers
Solomon Wanyonyi
Mathews M Dida
Emmarold E Mneney
Alice Muchugi
Jesse Machuka
Santie M de Villiers

Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain ...

Identification of SNP and SSR markers in finger millet using next generation sequencing technologies

Gimode, D
Odeny, D
de Villiers, E
Wanyonyi, S
Dida, M
Mneney, E
Muchugi, A
Machuka, J
de Villiers, S

January 2016

Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain ...

Identification of SNP and SSR markers in finger millet using Next generation sequencing technologies

Gimode, D
Odeny, D
De Villiers, E
Wanyonyi, S
Dida, M
Mneney, E
Muchugi, A
Machuka, J
De Villiers, S

January 2016

Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain ...

The value of single nucleotide polymorphism consortium in sugarcane

Henry, Robert J
Cordeiro, Giovanni M

January 2003

Single Nucleotide Polymorphism (SNP) markers are key tools in genetics research in many species. Lar...

Data from: Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): comparative analysis of global accessions and Senegalese landraces

Hu, Zhenbin
Mbacké, Bassirou
Perumal, Ramasamy
Guèye, Mame Codou
Sy, Ousmane
Bouchet, Sophie
Prasad, P. V. Vara
Morris, Geoffrey P.

December 2015

Background: Pearl millet is a staple food for people in arid and semi-arid regions of Africa and Sou...

Composite collection of Pearl Millet.

Upadhyaya, H D

January 2009

At ICRISAT genebank, as part of the Generation Challenge Program (GCP) under project: GCP. (SP1)200...

Number of variants and genotyping rates for SNP datasets generated in this study.

John Soghigian (3418565)
Theodore G. Andreadis (257136)
Goudarz Molaei (790980)

August 2018

Number of variants and genotyping rates for SNP datasets generated in this study.</p

Data from: A high density SNP chip for genotyping great tit (Parus major) populations and its application to studying the genetic architecture of exploration behaviour

Kim, Jun-Mo
Santure, Anna W.
Barton, Henry J.
Quinn, John L.
Cole, Eleanor F.
Visser, Marcel E.
Sheldon, Ben C.
Groenen, Martien A.M.
van Oers, Kees
Slate, Jon

March 2018

High density SNP microarrays (‘SNP chips’) are a rapid, accurate and efficient method for genotyping...

SNP data by genotyping by sequnecing in pearl millet germplasm

Zhenbin Hu (3248133)
Bassirou Mbacké (3248127)
Ramasamy Perumal (3248136)
Mame Codou Guèye (3248130)
Ousmane Sy (3248124)
Sophie Bouchet (177842)
P. V. Vara Prasad (580509)
Geoffrey P. Morris (181709)

October 2016

The upload SNP data, including 83,875 SNPs, was generated by genotyping by sequencing in 500 pearl m...

Table_1_Development of a new AgriSeq 4K mid-density SNP genotyping panel and its utility in pearl millet breeding.xlsx

Janani Semalaiyappan (14079462)
Sivasubramani Selvanayagam (10902291)
Abhishek Rathore (560197)
SK. Gupta (14368725)
Animikha Chakraborty (9742241)
Krishna Reddy Gujjula (9990308)
Suren Haktan (14368728)
Aswini Viswanath (9742244)
Renuka Malipatil (9742247)
Priya Shah (579065)
Mahalingam Govindaraj (6732320)
John Carlos Ignacio (8843531)
Sanjana Reddy (12749300)
Ashok Kumar Singh (9521960)
Nepolean Thirunavukkarasu (196144)

January 2023

Pearl millet is a crucial nutrient-rich staple food in Asia and Africa and adapted to the climate of...

Genotyping-by-Sequencing SNP identification for crops without a reference genome : using transcriptome based mapping as an alternative strategy

Berthouly, Cécile
Mariac, Cédric
Couderc, Marie
Pouzadoux, J.
Floc'h, J. B.
Vigouroux, Yves

January 2016

Next-generation sequencing opens the way for genomic studies of diversity even for non-model crops a...

Genotyping-by-Sequencing SNP Identification for Crops without a Reference Genome: Using Transcriptome Based Mapping as an Alternative Strategy

Berthouly-Salazar, Cécile
Mariac, Cédric
Couderc, Marie
Pouzadoux, Juliette
Floc’h, Jean-Baptiste
Vigouroux, Yves

January 2016

International audienceNext-generation sequencing opens the way for genomic studies of diversity even...

Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-by-sequencing (GBS) approach

Moumouni, K. H.
Kountche, B. A.
Jean, M.
Hash, C. T.
Vigouroux, Yves
Haussmann, B. I. G.
Belzile, F.

January 2015

Pearl millet is the main component of traditional farming systems and a staple grain in the diet of ...

SCAMing: an efficient high throughput approach to discovery and analysis of Snps for genotyping of tropical crop species

Eliott, Frances G
Cordeiro, Giovanni M
Rice, Nicole F
Cronin, James K
Waters, Daniel LE
Bundock, Peter C
Bowen, Stirling
Henry, Robert J

January 2006

Model organisms have well established genetic marker tools. However, genotyping of the wide range of...

Development of a new AgriSeq 4K mid-density SNP genotyping panel and its utility in pearl millet breeding

Semalaiyappan, J
Selvanayagam, S
Rathore, A
Gupta, S K
Chakraborty, A
Gujjula, K R
Haktan, S
Viswanath, A
Malipatil, R
Shah, P
Govindaraj, M
Ignacio, J C
Reddy, S
Singh, A K
Thirunavukkarasu, N

January 2023

Pearl millet is a crucial nutrient-rich staple food in Asia and Africa and adapted to the climate of...

Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies.

Davis Gimode
Damaris A Odeny
Etienne P de Villiers
Solomon Wanyonyi
Mathews M Dida
Emmarold E Mneney
Alice Muchugi
Jesse Machuka
Santie M de Villiers

Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain ...

Identification of SNP and SSR markers in finger millet using next generation sequencing technologies

Gimode, D
Odeny, D
de Villiers, E
Wanyonyi, S
Dida, M
Mneney, E
Muchugi, A
Machuka, J
de Villiers, S

January 2016

Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain ...

Identification of SNP and SSR markers in finger millet using Next generation sequencing technologies

Gimode, D
Odeny, D
De Villiers, E
Wanyonyi, S
Dida, M
Mneney, E
Muchugi, A
Machuka, J
De Villiers, S

January 2016

Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain ...

The value of single nucleotide polymorphism consortium in sugarcane

Henry, Robert J
Cordeiro, Giovanni M

January 2003

Single Nucleotide Polymorphism (SNP) markers are key tools in genetics research in many species. Lar...

Data from: Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): comparative analysis of global accessions and Senegalese landraces

Hu, Zhenbin
Mbacké, Bassirou
Perumal, Ramasamy
Guèye, Mame Codou
Sy, Ousmane
Bouchet, Sophie
Prasad, P. V. Vara
Morris, Geoffrey P.

December 2015

Background: Pearl millet is a staple food for people in arid and semi-arid regions of Africa and Sou...

Composite collection of Pearl Millet.

Upadhyaya, H D

January 2009

At ICRISAT genebank, as part of the Generation Challenge Program (GCP) under project: GCP. (SP1)200...

Number of variants and genotyping rates for SNP datasets generated in this study.

John Soghigian (3418565)
Theodore G. Andreadis (257136)
Goudarz Molaei (790980)

August 2018

Number of variants and genotyping rates for SNP datasets generated in this study.</p

Data from: A high density SNP chip for genotyping great tit (Parus major) populations and its application to studying the genetic architecture of exploration behaviour

Kim, Jun-Mo
Santure, Anna W.
Barton, Henry J.
Quinn, John L.
Cole, Eleanor F.
Visser, Marcel E.
Sheldon, Ben C.
Groenen, Martien A.M.
van Oers, Kees
Slate, Jon

March 2018

High density SNP microarrays (‘SNP chips’) are a rapid, accurate and efficient method for genotyping...

SNP data by genotyping by sequnecing in pearl millet germplasm

Abstract

Extracted data

SNP data by genotyping by sequnecing in pearl millet germplasm

Abstract

Extracted data

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