S. cerevisiae whole-genome SNP alignment

Knudsen, Kerry
Lendemer, James C.
Kocourková, Jana

November 2018

This is a zipped (.zip) folder that contains the alignments used for molecular phylogenetic analyses...

When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes

Shea N. Gardner
Barry G. Hall

August 2016

Effective use of rapid and inexpensive whole genome sequencing for microbes requires fast, memory ef...

Whole genome alignments of 15 sequence clusters of similar isolates

Croucher, Nicholas J.
Finkelstein, Jonathan A.
Pelton, Steven I.
Parkhill, Julian
Bentley, Stephen D.
Hanage, William P.
Lipsitch, Marc

October 2015

Fifteen FASTA format whole genome alignments, each corresponding to one of the monophyletic sequence...

S. cerevisiae whole-genome SNP alignment

Pedro Almeida (743373)
Raquel Barbosa (3322266)
Polona Zalar (536680)
Yumi Imanishi (2481925)
Kiminori Shimizu (276946)
Benedetta Turchetti (3322263)
Jean-Luc Legras (202388)
Marta Serra (3322269)
Sylvie Dequin (205208)
Arnaud Couloux (6018)
Julie Guy (478463)
Douda Bensasson (68342)
Paula Gonçalves (129720)
José Paulo Sampaio (218799)

November 2016

This is a gzip/tar compressed data archive containing the concatenated SNP alignment of S. cerevisia...

S. cerevisiae (restricted dataset) whole-genome SNP alignment with outgroup S. paradoxus, related to Figure 3

Almeida, Pedro
Barbosa, Raquel
Zalar, Polona
Imanishi, Yumi
Shimizu, Kiminori
Turchetti, Benedetta
Legras, Jean-Luc
Serra, Marta
Dequin, Sylvie
Couloux, Arnaud
Guy, Julie
Bensasson, Douda
Gonçalves, Paula
Sampaio, José Paulo

August 2015

This is a gzip/tar compressed data archive containing the concatenated SNP alignment of the restrict...

S. cerevisiae (large dataset) whole-genome SNP alignment with outgroup S. paradoxus, related to Figure S3

Pedro Almeida (743373)
Raquel Barbosa (3322266)
Polona Zalar (536680)
Yumi Imanishi (2481925)
Kiminori Shimizu (276946)
Benedetta Turchetti (3322263)
Jean-Luc Legras (202388)
Marta Serra (3322269)
Sylvie Dequin (205208)
Arnaud Couloux (6018)
Julie Guy (478463)
Douda Bensasson (68342)
Paula Gonçalves (129720)
José Paulo Sampaio (218799)

November 2016

This is a gzip/tar compressed data archive containing the concatenated SNP alignment of the large da...

cerevisiae_alignment

Katie E. Hyma (752977)
Justin C. Fay (157982)

October 2016

Sequence alignment (concatenated) and corresponding genomic positions for S. cerevisia

Chromosome alignments of Wine and Mediterranean oaks populations

Almeida, Pedro
Barbosa, Raquel
Bensasson, Douda
Gonçalves, Paula
Sampaio, José Paulo

February 2017

This is a gzip/tar compressed data archive containing the chromosome alignments of Wine and Mediterr...

Sequence alignments

Nathan R. Campbell (3247386)
Shawn R. Narum (3244473)

November 2016

.zip file contains aligned sequence data from which SNPs were identified and assays were created

Individual Gene Alignments

David W. Weisrock (251090)
Stacey D. Smith (3262935)
Lauren M. Chan (3272619)
Karla Biebouw (3298107)
Peter M. Kappeler (104344)
Anne D. Yoder (216662)

November 2016

A compressed file containing the 12 nuclear and one mitochondrial data sets. Each gene is aligned as...

Mutliple sequence alignments including HSV-2v sequences

Burrel, Sonia
Boutolleau, David
Ryu, Diane
Agut, Henri
Merkel, Kevin
Leendertz, Fabian H.
Calvignac-Spencer, Sébastien

April 2017

This archive contains the following alignments: Whole genome 1, 2 and 3; Whole genome de novo 2 and ...

group-4 alignment and SNPs

Rutger Aldo Vos

August 2021

Alignment of reads for the WGS of the Jersey Kale specimen against the B. oleracea reference genome ...

Sequence_alignments

Spinks, Phillip Q.
Thomson, Robert C.
Shaffer, H. Bradley

May 2019

This folder contains all of the nucleotide sequence alignments used to generate SNPs in nexus format...

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Page, AJ
Taylor, B
Delaney, AJ
Soares, J
Seemann, T
Keane, JA
Harris, SR

April 2016

Rapidly decreasing genome sequencing costs have led to a proportionate increase in the number of sam...

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

Shea N. Gardner (11724)
Barry G. Hall (281725)

December 2013

<div><p>Effective use of rapid and inexpensive whole genome sequencing for microbes requires fast, m...

data_packet

Knudsen, Kerry
Lendemer, James C.
Kocourková, Jana

November 2018

This is a zipped (.zip) folder that contains the alignments used for molecular phylogenetic analyses...

When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes

Shea N. Gardner
Barry G. Hall

August 2016

Effective use of rapid and inexpensive whole genome sequencing for microbes requires fast, memory ef...

Whole genome alignments of 15 sequence clusters of similar isolates

Croucher, Nicholas J.
Finkelstein, Jonathan A.
Pelton, Steven I.
Parkhill, Julian
Bentley, Stephen D.
Hanage, William P.
Lipsitch, Marc

October 2015

Fifteen FASTA format whole genome alignments, each corresponding to one of the monophyletic sequence...

S. cerevisiae whole-genome SNP alignment

Pedro Almeida (743373)
Raquel Barbosa (3322266)
Polona Zalar (536680)
Yumi Imanishi (2481925)
Kiminori Shimizu (276946)
Benedetta Turchetti (3322263)
Jean-Luc Legras (202388)
Marta Serra (3322269)
Sylvie Dequin (205208)
Arnaud Couloux (6018)
Julie Guy (478463)
Douda Bensasson (68342)
Paula Gonçalves (129720)
José Paulo Sampaio (218799)

November 2016

This is a gzip/tar compressed data archive containing the concatenated SNP alignment of S. cerevisia...

S. cerevisiae (restricted dataset) whole-genome SNP alignment with outgroup S. paradoxus, related to Figure 3

Almeida, Pedro
Barbosa, Raquel
Zalar, Polona
Imanishi, Yumi
Shimizu, Kiminori
Turchetti, Benedetta
Legras, Jean-Luc
Serra, Marta
Dequin, Sylvie
Couloux, Arnaud
Guy, Julie
Bensasson, Douda
Gonçalves, Paula
Sampaio, José Paulo

August 2015

This is a gzip/tar compressed data archive containing the concatenated SNP alignment of the restrict...

S. cerevisiae (large dataset) whole-genome SNP alignment with outgroup S. paradoxus, related to Figure S3

Pedro Almeida (743373)
Raquel Barbosa (3322266)
Polona Zalar (536680)
Yumi Imanishi (2481925)
Kiminori Shimizu (276946)
Benedetta Turchetti (3322263)
Jean-Luc Legras (202388)
Marta Serra (3322269)
Sylvie Dequin (205208)
Arnaud Couloux (6018)
Julie Guy (478463)
Douda Bensasson (68342)
Paula Gonçalves (129720)
José Paulo Sampaio (218799)

November 2016

This is a gzip/tar compressed data archive containing the concatenated SNP alignment of the large da...

cerevisiae_alignment

Katie E. Hyma (752977)
Justin C. Fay (157982)

October 2016

Sequence alignment (concatenated) and corresponding genomic positions for S. cerevisia

Chromosome alignments of Wine and Mediterranean oaks populations

Almeida, Pedro
Barbosa, Raquel
Bensasson, Douda
Gonçalves, Paula
Sampaio, José Paulo

February 2017

This is a gzip/tar compressed data archive containing the chromosome alignments of Wine and Mediterr...

Sequence alignments

Nathan R. Campbell (3247386)
Shawn R. Narum (3244473)

November 2016

.zip file contains aligned sequence data from which SNPs were identified and assays were created

Individual Gene Alignments

David W. Weisrock (251090)
Stacey D. Smith (3262935)
Lauren M. Chan (3272619)
Karla Biebouw (3298107)
Peter M. Kappeler (104344)
Anne D. Yoder (216662)

November 2016

A compressed file containing the 12 nuclear and one mitochondrial data sets. Each gene is aligned as...

Mutliple sequence alignments including HSV-2v sequences

Burrel, Sonia
Boutolleau, David
Ryu, Diane
Agut, Henri
Merkel, Kevin
Leendertz, Fabian H.
Calvignac-Spencer, Sébastien

April 2017

This archive contains the following alignments: Whole genome 1, 2 and 3; Whole genome de novo 2 and ...

group-4 alignment and SNPs

Rutger Aldo Vos

August 2021

Alignment of reads for the WGS of the Jersey Kale specimen against the B. oleracea reference genome ...

Sequence_alignments

Spinks, Phillip Q.
Thomson, Robert C.
Shaffer, H. Bradley

May 2019

This folder contains all of the nucleotide sequence alignments used to generate SNPs in nexus format...

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Page, AJ
Taylor, B
Delaney, AJ
Soares, J
Seemann, T
Keane, JA
Harris, SR

April 2016

Rapidly decreasing genome sequencing costs have led to a proportionate increase in the number of sam...

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

Shea N. Gardner (11724)
Barry G. Hall (281725)

December 2013

<div><p>Effective use of rapid and inexpensive whole genome sequencing for microbes requires fast, m...

data_packet

Knudsen, Kerry
Lendemer, James C.
Kocourková, Jana

November 2018

This is a zipped (.zip) folder that contains the alignments used for molecular phylogenetic analyses...

When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes

Shea N. Gardner
Barry G. Hall

August 2016

Effective use of rapid and inexpensive whole genome sequencing for microbes requires fast, memory ef...

Whole genome alignments of 15 sequence clusters of similar isolates

Croucher, Nicholas J.
Finkelstein, Jonathan A.
Pelton, Steven I.
Parkhill, Julian
Bentley, Stephen D.
Hanage, William P.
Lipsitch, Marc

October 2015

Fifteen FASTA format whole genome alignments, each corresponding to one of the monophyletic sequence...

S. cerevisiae whole-genome SNP alignment

Abstract

Extracted data

S. cerevisiae whole-genome SNP alignment

Abstract

Extracted data

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