PLINK binary input files

UK genotype file

Santure, Anna W.
Poissant, Jocelyn
De Cauwer, Isabelle
van Oers, Kees
Robinson, Matthew R.
Quinn, John L.
Groenen, Martien A. M.
Visser, Marcel E.
Sheldon, Ben C.
Slate, Jon

November 2015

Genotypes for the 2,497 UK individuals. These are standard plink files (see http://pngu.mgh.harvard...

Plink file data for Barki Ruminants (sheep and goats)

Kim, Eui-Soo
Elbeltagy, Ahmed R.
Aboul-Naga, Adel M.
Rischkowsky, Barbara
Sayre, Bryan
Mwacharo, Joram M.
Rothschild, M. F.

September 2015

The data contains SNP genotype data for Barki sheep and goats that can be used in Plink

Association_SNPfiles_Plink

Armando Geraldes (3272514)
Charles A. Hefer (3282048)
Arnaud Capron (534160)
Natalia Kolosova (88922)
Felix Martinez-Nuñez (3260301)
Raju Y. Soolanayakanahally (3282054)
Brian Stanton (3282051)
Robert D. Guy (483840)
Shawn D. Mansfield (483842)
Carl J. Douglas (483841)
Quentin C. B. Cronk (3253509)

October 2016

Plink input SNP files (from mapping to the P. trichocarpa reference genome v2.2) used for GWAS in T5...

PLINK binary input files

Elena Ciani (185004)
Emiliano Lasagna (456418)
Mariasilvia D’Andrea (3265866)
Ingrid Alloggio (3265857)
Fabio Marroni (73706)
Simone Ceccobelli (456414)
Juan Vicente Delgado Bermejo (3265860)
Francesca Maria Sarti (3265869)
James Kijas (216935)
Johannes A. Lenstra (184968)
Fabio Pilla (3265863)
International Sheep Genomics Consortium (3265872)

October 2016

PLINK binary input files (.bed, .fam, .bim) for 671 individuals typed at 45847 SNP loci

PLINK MAP file for 271 genome-wide SNPs

Wenzel, Marius A.
James, Marianne C.
Piertney, Stuart B.

July 2015

PLINK MAP file containing chromosomal locations of 271 SNPs that passed quality control

WolvesAll_22feb2012.map

Stronen, Astrid V.
Jędrzejewska, Bogumiła
Pertoldi, Cino
Demontis, Ditte
Randi, Ettore
Niedziałkowska, Magdalena
Pilot, Małgorzata
Sidorovich, Vadim E.
Dykyy, Ihor
Kusak, Josip
Tsingarska, Elena
Kojola, Ilpo
Karamanlidis, Alexandros A.
Ornicans, Aivars
Lobkov, Vladimir A.
Dumenko, Vitalii P.
Czarnomska, Sylwia D.

October 2013

Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PL...

NL genotype file

Anna W. Santure (3197772)
Jocelyn Poissant (3241260)
Isabelle De Cauwer (3241266)
Kees van Oers (543107)
Matthew R. Robinson (3241263)
John L. Quinn (785150)
Martien A. M. Groenen (116301)
Marcel E. Visser (163418)
Ben C. Sheldon (117245)
Jon Slate (23132)

November 2016

Genotypes for the 1,407 NL individuals. These are standard plink files (see http://pngu.mgh.harvard....

PLINK formatted genotype data for 53 Nepali Tibetans

Jeong, Choognwon
Peter, Benjamin M.
Basnyat, Buddha
Neupane, Maniraj
Beall, Cynthia M.
Childs, Geoff
Craig, Sienna R.
Novembre, John
Di Rienzo, Anna

May 2017

Compressed tarball archive containing PLINK formatted files (bim, bed, fam) with genotype data for 5...

59_EuropeanWolves

Stronen, Astrid Vik
Jędrzejewska, Bogumiła
Pertoldi, Cino
Demontis, Ditte
Randi, Ettore
Niedziałkowska, Magdalena
Borowik, Tomasz
Sidorovich, Vadim E.
Kusak, Josip
Kojola, Ilpo
Karamanlidis, Alexandros A.
Ozolins, Janis
Dumenko, Vitalii
Czarnomska, Sylwia D.

September 2015

Single nucleotide polymorphism (SNP) raw data files for 59 individuals in PLINK-format

Northern European cattle_genomic profiles.zip

Astrid Stronen (3312192)
Cino Pertoldi (469969)
Laura Iacolina (3249051)
Haja Kadarmideen (3583106)
Torsten Kristensen (3248397)

February 2019

The data include PLINK files in binary format (bed, bim, fam) for 195 individual cattle and 677,311 ...

Genotypes in PLINK binary format (*.bed; 1 of 3)

Morgan, Andrew P.
Fu, Chen-Ping
Kao, Chia-Yu
Welsh, Catherine E.
Didion, John P.
Yadgary, Liran
Hyacinth, Leeanna
Ferris, Martin T.
Bell, Timothy A.
Miller, Darla R.
Giusti-Rodriguez, Paola
Nonneman, Randal J.
Cook, Kevin D.
Whitmire, Jason K.
Gralinski, Lisa E.
Keller, Mark
Attie, Alan D.
Churchill, Gary A.
Petkov, Petko
Sullivan, Patrick F.
Brennan, Jennifer R.
McMillan, Leonard
Pardo-Manuel de Villena, Fernando

September 2016

Genotypes for reference samples in PLINK binary format. The PLINK format entails three separate fil...

Genotypes in PLINK binary format (*.bim; 2 of 3)

Andrew P. Morgan (674868)
Chen-Ping Fu (3247959)
Chia-Yu Kao (3247956)
Catherine E. Welsh (3247962)
John P. Didion (466184)
Liran Yadgary (692308)
Leeanna Hyacinth (3247971)
Martin T. Ferris (383582)
Timothy A. Bell (383583)
Darla R. Miller (383588)
Paola Giusti-Rodriguez (3247965)
Randal J. Nonneman (674870)
Kevin D. Cook (3247953)
Jason K. Whitmire (44259)
Lisa E. Gralinski (383586)
Mark Keller (765299)
Alan D. Attie (42426)
Gary A. Churchill (173030)
Petko Petkov (3247974)
Patrick F. Sullivan (143608)
Jennifer R. Brennan (3247968)
Leonard McMillan (383587)
Fernando Pardo-Manuel de Villena (121050)

October 2016

Genotypes for reference samples in PLINK binary format. The PLINK format entails three separate fil...

Buffalo SNPchip data

Colli, Licia
Milanesi, Marco
Vajana, Elia
Iamartino, Daniela
Bomba, Lorenzo
Puglisi, Francesco
Del Corvo, Marcello
Nicolazzi, Ezequiel Luis
El-din Ahmed, Sahar Saad
Herrera, Jesus Rommel V.
Cruz, Libertado
Zhang, Shuju
Liang, Aixin
Hua, Gouhua
Yang, Ligou
Hao, Xingjie
Zuo, Fuyuan
Lai, Song-Jia
Wang, Shuilian
Liu, Ruyu
Gong, Yundeng
Mokhber, Mahdi
Mao, Yongjiang
Guan, Feng
Vlaic, Augustin
Vlaic, Bogdan
Ramunno, Luigi
Cosenza, Gianfranco
Ahmad, Ali
Soysal, Ihsan
Ünal, Emel Özkan
Ketudat-Cairns, Mariena
Garcia, José Fernando
Utsunomiya, Yuri Tani
Baruselli, Pietro Sampaio
Amaral, Maria Elisabete Jorge
Parnpai, Rangsun
Drummond, Marcela Gonçalves
Galbusera, Peter
Burton, James
Hoal, Eileen
Yusnizar, Yulnawati
Sumantri, Cece
Moioli, Bianca
Valentini, Alessio
Stella, Alessandra
Williams, John L.
Ajmone Marsan, Paolo

March 2018

SNP data used in buffalo diversity study. SNPchip data are in binary PLINK format

WolvesAll_22feb2012.ped

Stronen, Astrid V.
Jędrzejewska, Bogumiła
Pertoldi, Cino
Demontis, Ditte
Randi, Ettore
Niedziałkowska, Magdalena
Pilot, Małgorzata
Sidorovich, Vadim E.
Dykyy, Ihor
Kusak, Josip
Tsingarska, Elena
Kojola, Ilpo
Karamanlidis, Alexandros A.
Ornicans, Aivars
Lobkov, Vladimir A.
Dumenko, Vitalii P.
Czarnomska, Sylwia D.

October 2013

Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PL...

Sudanese and South Sudanese genomic variation

Hollfelder, Nina
Schlebusch, Carina M.
Günther, Torsten
Babiker, Hiba
Hassan, Hisham Y.
Jakobsson, Mattias

August 2017

Uncleaned plink (bed bim fam) files from 18 Sudanese and South Sudanese populations. Created using I...

UK genotype file

Santure, Anna W.
Poissant, Jocelyn
De Cauwer, Isabelle
van Oers, Kees
Robinson, Matthew R.
Quinn, John L.
Groenen, Martien A. M.
Visser, Marcel E.
Sheldon, Ben C.
Slate, Jon

November 2015

Genotypes for the 2,497 UK individuals. These are standard plink files (see http://pngu.mgh.harvard...

Plink file data for Barki Ruminants (sheep and goats)

Kim, Eui-Soo
Elbeltagy, Ahmed R.
Aboul-Naga, Adel M.
Rischkowsky, Barbara
Sayre, Bryan
Mwacharo, Joram M.
Rothschild, M. F.

September 2015

The data contains SNP genotype data for Barki sheep and goats that can be used in Plink

Association_SNPfiles_Plink

Armando Geraldes (3272514)
Charles A. Hefer (3282048)
Arnaud Capron (534160)
Natalia Kolosova (88922)
Felix Martinez-Nuñez (3260301)
Raju Y. Soolanayakanahally (3282054)
Brian Stanton (3282051)
Robert D. Guy (483840)
Shawn D. Mansfield (483842)
Carl J. Douglas (483841)
Quentin C. B. Cronk (3253509)

October 2016

Plink input SNP files (from mapping to the P. trichocarpa reference genome v2.2) used for GWAS in T5...

PLINK binary input files

Elena Ciani (185004)
Emiliano Lasagna (456418)
Mariasilvia D’Andrea (3265866)
Ingrid Alloggio (3265857)
Fabio Marroni (73706)
Simone Ceccobelli (456414)
Juan Vicente Delgado Bermejo (3265860)
Francesca Maria Sarti (3265869)
James Kijas (216935)
Johannes A. Lenstra (184968)
Fabio Pilla (3265863)
International Sheep Genomics Consortium (3265872)

October 2016

PLINK binary input files (.bed, .fam, .bim) for 671 individuals typed at 45847 SNP loci

PLINK MAP file for 271 genome-wide SNPs

Wenzel, Marius A.
James, Marianne C.
Piertney, Stuart B.

July 2015

PLINK MAP file containing chromosomal locations of 271 SNPs that passed quality control

WolvesAll_22feb2012.map

Stronen, Astrid V.
Jędrzejewska, Bogumiła
Pertoldi, Cino
Demontis, Ditte
Randi, Ettore
Niedziałkowska, Magdalena
Pilot, Małgorzata
Sidorovich, Vadim E.
Dykyy, Ihor
Kusak, Josip
Tsingarska, Elena
Kojola, Ilpo
Karamanlidis, Alexandros A.
Ornicans, Aivars
Lobkov, Vladimir A.
Dumenko, Vitalii P.
Czarnomska, Sylwia D.

October 2013

Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PL...

NL genotype file

Anna W. Santure (3197772)
Jocelyn Poissant (3241260)
Isabelle De Cauwer (3241266)
Kees van Oers (543107)
Matthew R. Robinson (3241263)
John L. Quinn (785150)
Martien A. M. Groenen (116301)
Marcel E. Visser (163418)
Ben C. Sheldon (117245)
Jon Slate (23132)

November 2016

Genotypes for the 1,407 NL individuals. These are standard plink files (see http://pngu.mgh.harvard....

PLINK formatted genotype data for 53 Nepali Tibetans

Jeong, Choognwon
Peter, Benjamin M.
Basnyat, Buddha
Neupane, Maniraj
Beall, Cynthia M.
Childs, Geoff
Craig, Sienna R.
Novembre, John
Di Rienzo, Anna

May 2017

Compressed tarball archive containing PLINK formatted files (bim, bed, fam) with genotype data for 5...

59_EuropeanWolves

Stronen, Astrid Vik
Jędrzejewska, Bogumiła
Pertoldi, Cino
Demontis, Ditte
Randi, Ettore
Niedziałkowska, Magdalena
Borowik, Tomasz
Sidorovich, Vadim E.
Kusak, Josip
Kojola, Ilpo
Karamanlidis, Alexandros A.
Ozolins, Janis
Dumenko, Vitalii
Czarnomska, Sylwia D.

September 2015

Single nucleotide polymorphism (SNP) raw data files for 59 individuals in PLINK-format

Northern European cattle_genomic profiles.zip

Astrid Stronen (3312192)
Cino Pertoldi (469969)
Laura Iacolina (3249051)
Haja Kadarmideen (3583106)
Torsten Kristensen (3248397)

February 2019

The data include PLINK files in binary format (bed, bim, fam) for 195 individual cattle and 677,311 ...

Genotypes in PLINK binary format (*.bed; 1 of 3)

Morgan, Andrew P.
Fu, Chen-Ping
Kao, Chia-Yu
Welsh, Catherine E.
Didion, John P.
Yadgary, Liran
Hyacinth, Leeanna
Ferris, Martin T.
Bell, Timothy A.
Miller, Darla R.
Giusti-Rodriguez, Paola
Nonneman, Randal J.
Cook, Kevin D.
Whitmire, Jason K.
Gralinski, Lisa E.
Keller, Mark
Attie, Alan D.
Churchill, Gary A.
Petkov, Petko
Sullivan, Patrick F.
Brennan, Jennifer R.
McMillan, Leonard
Pardo-Manuel de Villena, Fernando

September 2016

Genotypes for reference samples in PLINK binary format. The PLINK format entails three separate fil...

Genotypes in PLINK binary format (*.bim; 2 of 3)

Andrew P. Morgan (674868)
Chen-Ping Fu (3247959)
Chia-Yu Kao (3247956)
Catherine E. Welsh (3247962)
John P. Didion (466184)
Liran Yadgary (692308)
Leeanna Hyacinth (3247971)
Martin T. Ferris (383582)
Timothy A. Bell (383583)
Darla R. Miller (383588)
Paola Giusti-Rodriguez (3247965)
Randal J. Nonneman (674870)
Kevin D. Cook (3247953)
Jason K. Whitmire (44259)
Lisa E. Gralinski (383586)
Mark Keller (765299)
Alan D. Attie (42426)
Gary A. Churchill (173030)
Petko Petkov (3247974)
Patrick F. Sullivan (143608)
Jennifer R. Brennan (3247968)
Leonard McMillan (383587)
Fernando Pardo-Manuel de Villena (121050)

October 2016

Genotypes for reference samples in PLINK binary format. The PLINK format entails three separate fil...

Buffalo SNPchip data

Colli, Licia
Milanesi, Marco
Vajana, Elia
Iamartino, Daniela
Bomba, Lorenzo
Puglisi, Francesco
Del Corvo, Marcello
Nicolazzi, Ezequiel Luis
El-din Ahmed, Sahar Saad
Herrera, Jesus Rommel V.
Cruz, Libertado
Zhang, Shuju
Liang, Aixin
Hua, Gouhua
Yang, Ligou
Hao, Xingjie
Zuo, Fuyuan
Lai, Song-Jia
Wang, Shuilian
Liu, Ruyu
Gong, Yundeng
Mokhber, Mahdi
Mao, Yongjiang
Guan, Feng
Vlaic, Augustin
Vlaic, Bogdan
Ramunno, Luigi
Cosenza, Gianfranco
Ahmad, Ali
Soysal, Ihsan
Ünal, Emel Özkan
Ketudat-Cairns, Mariena
Garcia, José Fernando
Utsunomiya, Yuri Tani
Baruselli, Pietro Sampaio
Amaral, Maria Elisabete Jorge
Parnpai, Rangsun
Drummond, Marcela Gonçalves
Galbusera, Peter
Burton, James
Hoal, Eileen
Yusnizar, Yulnawati
Sumantri, Cece
Moioli, Bianca
Valentini, Alessio
Stella, Alessandra
Williams, John L.
Ajmone Marsan, Paolo

March 2018

SNP data used in buffalo diversity study. SNPchip data are in binary PLINK format

WolvesAll_22feb2012.ped

Stronen, Astrid V.
Jędrzejewska, Bogumiła
Pertoldi, Cino
Demontis, Ditte
Randi, Ettore
Niedziałkowska, Magdalena
Pilot, Małgorzata
Sidorovich, Vadim E.
Dykyy, Ihor
Kusak, Josip
Tsingarska, Elena
Kojola, Ilpo
Karamanlidis, Alexandros A.
Ornicans, Aivars
Lobkov, Vladimir A.
Dumenko, Vitalii P.
Czarnomska, Sylwia D.

October 2013

Single nucleotide polymorphism (SNP) raw data files for 177 individuals for use with the software PL...

Sudanese and South Sudanese genomic variation

Hollfelder, Nina
Schlebusch, Carina M.
Günther, Torsten
Babiker, Hiba
Hassan, Hisham Y.
Jakobsson, Mattias

August 2017

Uncleaned plink (bed bim fam) files from 18 Sudanese and South Sudanese populations. Created using I...

UK genotype file

Santure, Anna W.
Poissant, Jocelyn
De Cauwer, Isabelle
van Oers, Kees
Robinson, Matthew R.
Quinn, John L.
Groenen, Martien A. M.
Visser, Marcel E.
Sheldon, Ben C.
Slate, Jon

November 2015

Genotypes for the 2,497 UK individuals. These are standard plink files (see http://pngu.mgh.harvard...

Plink file data for Barki Ruminants (sheep and goats)

Kim, Eui-Soo
Elbeltagy, Ahmed R.
Aboul-Naga, Adel M.
Rischkowsky, Barbara
Sayre, Bryan
Mwacharo, Joram M.
Rothschild, M. F.

September 2015

The data contains SNP genotype data for Barki sheep and goats that can be used in Plink

Association_SNPfiles_Plink

Armando Geraldes (3272514)
Charles A. Hefer (3282048)
Arnaud Capron (534160)
Natalia Kolosova (88922)
Felix Martinez-Nuñez (3260301)
Raju Y. Soolanayakanahally (3282054)
Brian Stanton (3282051)
Robert D. Guy (483840)
Shawn D. Mansfield (483842)
Carl J. Douglas (483841)
Quentin C. B. Cronk (3253509)

October 2016

Plink input SNP files (from mapping to the P. trichocarpa reference genome v2.2) used for GWAS in T5...

PLINK binary input files

Abstract

Extracted data

PLINK binary input files

Abstract

Extracted data

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