Maximum likelihood phylogeny based on the core genome alignment of 616 Streptococcus pneumoniae isolates

Newick format maximum likelihood phylogeny generated using the 106,196 polymorphic sites in a core genome alignment of 616 Streptococcus pneumoniae isolates. The tree was produced by RAxML using the general time reversible substitution model with a four category gamma distribution to correct for rate heterogeneity