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XML for EBSP analysis

Stoffel, Céline
Dufresnes, Christophe
Okello, John B. A.
Noirard, Christian
Joly, Pierre
Nyakaana, Silvester
Muwanika, Vincent B.
Alcala, Nicolas
Vuilleumier, Séverine
Siegismund, Hans R.
Fumagalli, Luca

Publication date

March 2015

DOI

10.5061/dryad.4cv02/2

Abstract

XML file used in BEAST for the Extended Bayesian Skyline Plot (EBSP) analysis of H. amphibius, based on control region, cytochrome-b and nuclear HMG-2 sequence

Extracted data

Related items

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Rambaut, Andrew
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Holmes, Edward C.
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Fourment, Mathieu
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Lee, Raphael T. C.
Deng, Yi-Mo
Gunalan, Vithiagaran
Lin, Xudong
Stockwell, Tim
Fedorova, Nadia B.
Zhou, Bin
Spirason, Natalie
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Costa, Anna-Maria
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Huang, Q. Sue
Jennings, Lance C.
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Beast input file (xml) with data and parameters used for Bayesian phylogenetic analysis of the HA da...

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BEAST XML files

Langat, Pinky
Raghwani, Jayna
Dudas, Gytis
Bowden, Thomas
Edwards, Stephanie
Gall, Astrid
Bedford, Trevor
Rambaut, Andrew
Daniels, Rodney
Russell, Colin
Pybus, Oliver
McCauley, John
Kellam, Paul
Watson, Simon

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Compressed file of BEAST input files (xml) used to infer the molecular clock phylogenies as well as ...

BEAST xml file - B/Victoria

Vijaykrishna, Dhanasekaran
Holmes, Edward C.
Joseph, Udayan
Fourment, Mathieu
Su, Yvonne C. F.
Halpin, Rebecca
Lee, Raphael T. C.
Deng, Yi-Mo
Gunalan, Vithiagaran
Lin, Xudong
Stockwell, Tim
Fedorova, Nadia B.
Zhou, Bin
Spirason, Natalie
Kühnert, Denise K.
Bošková, Veronika
Stadler, Tanja
Costa, Anna-Maria
Dwyer, Dominic E.
Huang, Q. Sue
Jennings, Lance C.
Rawlinson, William
Sullivan, Sheena G.
Hurt, Aeron C.
Maurer-Stroh, Sebastian
Wentworth, David
Smith, Gavin J. D.
Barr, Ian G.

January 2015

Beast input file (xml) with data and parameters used for Bayesian phylogenetic analysis of the HA da...

BEAST species tree analyses

Salariato, Diego L.
Zuloaga, Fernando O.

July 2016

xml file for species tree analyses in BEAST v2.3.0 under the coalescent-based method implemented in ...

XML for EBSP analysis

Céline Stoffel (3255939)
Christophe Dufresnes (220868)
John B. A. Okello (237747)
Christian Noirard (3255942)
Pierre Joly (3255936)
Silvester Nyakaana (726902)
Vincent B. Muwanika (47778)
Nicolas Alcala (3255933)
Séverine Vuilleumier (172744)
Hans R. Siegismund (244630)
Luca Fumagalli (168843)

October 2016

XML file used in BEAST for the Extended Bayesian Skyline Plot (EBSP) analysis of H. amphibius, based...

BEAST XML input file of the multilocus EBSP analysis

Elen A. Peres (719638)
Thadeu Sobral-Souza (719639)
Manolo F. Perez (719640)
Isabel A. S. Bonatelli (719641)
Daniel P. Silva (665730)
Marcio J. Silva (3293328)
Vera N. Solferini (719643)

November 2016

.xml input file used for the multilocus Extended Bayesian Skyline Plot analysis in the software BEAS...

Beast XML input file for EBSP analysis of Sicarius cariri clade 2

Magalhaes, Ivan L. F.
Oliveira, Ubirajara
Santos, Fabrício R.
Vidigal, Teofania H. D. A.
Brescovit, Antonio D.
Santos, Adalberto J.

September 2014

Beast XML input file for the Extended Bayesian Skyline Plot (EBSP) analysis for reconstructing the d...

BEAST EBSP XML Files

Thomas C. Giarla (3199704)
Sharon A. Jansa (349378)

November 2016

BEAST Extended Bayesian Skyline Plot XML input files for all six Thylamys lineages

Beast XML input file for EBSP analysis of Sicarius cariri clade 1

Magalhaes, Ivan L. F.
Oliveira, Ubirajara
Santos, Fabrício R.
Vidigal, Teofania H. D. A.
Brescovit, Antonio D.
Santos, Adalberto J.

September 2014

Beast XML input file for the Extended Bayesian Skyline Plot (EBSP) analysis for reconstructing the d...

Beast XML input files for EBSP analyses

Halas, Dominik
Simons, Andrew M.

December 2013

The XML input files for the Extended Bayesian Skyline Plots presented in Figure 6. ebspuppertennesse...

XML file for molecular calibration analysis

Céline Stoffel (3255939)
Christophe Dufresnes (220868)
John B. A. Okello (237747)
Christian Noirard (3255942)
Pierre Joly (3255936)
Silvester Nyakaana (726902)
Vincent B. Muwanika (47778)
Nicolas Alcala (3255933)
Séverine Vuilleumier (172744)
Hans R. Siegismund (244630)
Luca Fumagalli (168843)

October 2016

XML file used in BEAST for the molecular calibration analysis of CR H. amphibius sequences, using th...

Rossiter, Stephen J.
Kuo, Hao-Chih
Chen, Shiang-Fan
Fang, Yin-Ping
Flanders, Jon

June 2014

XML input files of the Extended Bayesian Skyline Plot (EBSP) analyses for individual local samples o...

BEAST cytb haplotype analysis input file

Justin C. Bagley (160060)

October 2016

Input data file in XML format used in Bayesian divergence time analysis of the cytb haplotype datase...

xml files for BEAST analyses

Wagner, Florian
Härtl, Sabine
Vogt, Robert
Oberprieler, Christoph

May 2017

xml files for BEAST analyses (DISSECT, SNAPP, Bayes Factor delimitation). File names of total datase...

BEAST xml file - B/Yamagata

Vijaykrishna, Dhanasekaran
Holmes, Edward C.
Joseph, Udayan
Fourment, Mathieu
Su, Yvonne C. F.
Halpin, Rebecca
Lee, Raphael T. C.
Deng, Yi-Mo
Gunalan, Vithiagaran
Lin, Xudong
Stockwell, Tim
Fedorova, Nadia B.
Zhou, Bin
Spirason, Natalie
Kühnert, Denise K.
Bošková, Veronika
Stadler, Tanja
Costa, Anna-Maria
Dwyer, Dominic E.
Huang, Q. Sue
Jennings, Lance C.
Rawlinson, William
Sullivan, Sheena G.
Hurt, Aeron C.
Maurer-Stroh, Sebastian
Wentworth, David
Smith, Gavin J. D.
Barr, Ian G.

January 2015

Beast input file (xml) with data and parameters used for Bayesian phylogenetic analysis of the HA da...

Figure 2 xml file

Ramiro Morales-Hojas (121624)
Jorge Vieira (52968)

November 2016

xml file used to run the BEAST analysis of Figure 2, using 153 species for which there was sequence ...

BEAST XML files

Langat, Pinky
Raghwani, Jayna
Dudas, Gytis
Bowden, Thomas
Edwards, Stephanie
Gall, Astrid
Bedford, Trevor
Rambaut, Andrew
Daniels, Rodney
Russell, Colin
Pybus, Oliver
McCauley, John
Kellam, Paul
Watson, Simon

January 2018

Compressed file of BEAST input files (xml) used to infer the molecular clock phylogenies as well as ...

BEAST xml file - B/Victoria

Vijaykrishna, Dhanasekaran
Holmes, Edward C.
Joseph, Udayan
Fourment, Mathieu
Su, Yvonne C. F.
Halpin, Rebecca
Lee, Raphael T. C.
Deng, Yi-Mo
Gunalan, Vithiagaran
Lin, Xudong
Stockwell, Tim
Fedorova, Nadia B.
Zhou, Bin
Spirason, Natalie
Kühnert, Denise K.
Bošková, Veronika
Stadler, Tanja
Costa, Anna-Maria
Dwyer, Dominic E.
Huang, Q. Sue
Jennings, Lance C.
Rawlinson, William
Sullivan, Sheena G.
Hurt, Aeron C.
Maurer-Stroh, Sebastian
Wentworth, David
Smith, Gavin J. D.
Barr, Ian G.

January 2015

Beast input file (xml) with data and parameters used for Bayesian phylogenetic analysis of the HA da...

BEAST species tree analyses

Salariato, Diego L.
Zuloaga, Fernando O.

July 2016

xml file for species tree analyses in BEAST v2.3.0 under the coalescent-based method implemented in ...