The supplemental data archives include trees and stem ages simulated under constant-rate birth-death processes for four different simulation experiments (simulation_1, simulation_2, simulation_3 and simulation_4), as well as a src folder which contains scripts for simulation and conducting the analyses
The simulation pipeline generates coalescent-based genealogies that comprise a mixed of current and ...
We present a fast and flexible software package—SimPhy—for the simulation of multiple gene families ...
<p>Results from simulations showing the proportion of phylogenies for which a temporally-varying spe...
Evolutionary biologists have long been fascinated by the extreme differences in species numbers acro...
Evolutionary biologists have long been fascinated by the extreme differences in species numbers acro...
Motivation: Most population genetic simulators fall into one of two classes, backward time simulator...
1. There is renewed interest in inferring evolutionary history by modelling diversification rates us...
Estimating time-dependent rates of speciation and extinction from dated phylogenetic trees of extant...
The development of methods to estimate rates of speciation and extinction from time-calibrated phylo...
Abstract.—We used simulations to compare the relative power of eight statistical tests to detect im-...
Cell lineages provide the framework for understanding how multicellular organisms are built and how ...
Developmental trajectory inference is the task of estimating the paths followed by cells over time a...
<p>Notes: Analyses were conducted using the ultrametric tree obtained in BEAST. All outgroups and in...
Explanations for gene tree discordance with respect to a species tree are commonly attributed to dee...
<p>The timeline indicates the age of populations in generations (G). For models H0a to H0e, genetic ...
The simulation pipeline generates coalescent-based genealogies that comprise a mixed of current and ...
We present a fast and flexible software package—SimPhy—for the simulation of multiple gene families ...
<p>Results from simulations showing the proportion of phylogenies for which a temporally-varying spe...
Evolutionary biologists have long been fascinated by the extreme differences in species numbers acro...
Evolutionary biologists have long been fascinated by the extreme differences in species numbers acro...
Motivation: Most population genetic simulators fall into one of two classes, backward time simulator...
1. There is renewed interest in inferring evolutionary history by modelling diversification rates us...
Estimating time-dependent rates of speciation and extinction from dated phylogenetic trees of extant...
The development of methods to estimate rates of speciation and extinction from time-calibrated phylo...
Abstract.—We used simulations to compare the relative power of eight statistical tests to detect im-...
Cell lineages provide the framework for understanding how multicellular organisms are built and how ...
Developmental trajectory inference is the task of estimating the paths followed by cells over time a...
<p>Notes: Analyses were conducted using the ultrametric tree obtained in BEAST. All outgroups and in...
Explanations for gene tree discordance with respect to a species tree are commonly attributed to dee...
<p>The timeline indicates the age of populations in generations (G). For models H0a to H0e, genetic ...
The simulation pipeline generates coalescent-based genealogies that comprise a mixed of current and ...
We present a fast and flexible software package—SimPhy—for the simulation of multiple gene families ...
<p>Results from simulations showing the proportion of phylogenies for which a temporally-varying spe...
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