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SNPs and genotypes identified in H. rufescens, Fort Ross 2011.

  • Rogers-Bennett, Laura
  • Kudela, Raphael M.
  • Palumbi, Stephen R.
  • De Wit, Pierre
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Publication date
May 2014
Icon DOI
10.5061/dryad.2qs35/1

Abstract

tab-delimited text file containing all SNPs passing the GATK VQSR algorithm found in Fort Ross abalone in 2011, and genotypes in all individuals assigned with Q20 as cutoff. The standard GATK best practise protocol v2 was followed, using an initial call set with Q30 as cutoff to train the VQSR. Raw data files are accessible at the NCBI Short Read Archive (SRA), project accession # SRP037568

Extracted data

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