Add to ORKGTaking into account the increase in use of the multi-core cluster architecture, in this paper we analyze the use of the various communication models (message passing, shared memory, their combination) to efficiently exploit the power of the architecture. Smith-Waterman algorithm, whose parallelization is based on a pipeline scheme due to problem data dependence, is used as test case to determine the similarity degree of two DNA sequences. Finally, future research lines are mentioned, aimed at optimizing the use of memory levels in the architecture.Red de Universidades con Carreras en Informática (RedUNCI
The transition to multi-core architectures can be attributed mainly to fundamental limitations in cl...
Abstract Background In recent years, the demand for computational power in computational biology has...
Multicomputer (distributed memory MIMD machines) have emerged as inexpensive, yet powerful parallel...
Taking into account the increase in use of the multi-core cluster architecture, in this paper we ana...
HPC (high perfomance computing) based on clusters of multicores is one of the main research lines in...
DNA sequence alignment is one of the most important operations of computational biology. In 1981, Sm...
Currently, most supercomputers are multicore clusters. This type of architectures is said to be hybr...
The hybrid message passing + shared memory programming model combines two parallel programming style...
The mixing of shared memory and message passing programming models within a single application has o...
A DNA sequence analysis parallelization in large databases using cluster, multi-cluster, and GRID is...
Biological sequence comparison is one of the most important tasks in Bioinformatics. Due to the grow...
Sequence alignment is an important tool for describing the relationships between DNA sequences. Many...
Hybrid programming, whereby shared-memory and message-passing programming techniques are combined wi...
We describe a methodology for developing high performance programs running on clusters of SMP no...
Since the invention of the transistor, clock frequency increase was the primary method of improving ...
The transition to multi-core architectures can be attributed mainly to fundamental limitations in cl...
Abstract Background In recent years, the demand for computational power in computational biology has...
Multicomputer (distributed memory MIMD machines) have emerged as inexpensive, yet powerful parallel...
Taking into account the increase in use of the multi-core cluster architecture, in this paper we ana...
HPC (high perfomance computing) based on clusters of multicores is one of the main research lines in...
DNA sequence alignment is one of the most important operations of computational biology. In 1981, Sm...
Currently, most supercomputers are multicore clusters. This type of architectures is said to be hybr...
The hybrid message passing + shared memory programming model combines two parallel programming style...
The mixing of shared memory and message passing programming models within a single application has o...
A DNA sequence analysis parallelization in large databases using cluster, multi-cluster, and GRID is...
Biological sequence comparison is one of the most important tasks in Bioinformatics. Due to the grow...
Sequence alignment is an important tool for describing the relationships between DNA sequences. Many...
Hybrid programming, whereby shared-memory and message-passing programming techniques are combined wi...
We describe a methodology for developing high performance programs running on clusters of SMP no...
Since the invention of the transistor, clock frequency increase was the primary method of improving ...
The transition to multi-core architectures can be attributed mainly to fundamental limitations in cl...
Abstract Background In recent years, the demand for computational power in computational biology has...
Multicomputer (distributed memory MIMD machines) have emerged as inexpensive, yet powerful parallel...