As a drop-in replacement of Continuous Electron Beam Accelerator Facility (CEBAF) 5kW CW klystron system, a 1497MHz, high efficiency magnetron using injection phase lock [1] and slow amplitude variation using magnetic field trimming and anode voltage modulation has been studied systematically using MatLab/Simulink simulations. The magnetron model is based the characteristics of experiment and manufacture chart on a 2.45GHz cooker type CW magnetron. To achieve high performance of a superconducting radio frequency (SRF) acceleration cavity with an electron beam loading, the magnetron's low level radio frequency (LLRF) control has been studied in two lock loops. In the frequency lock loop, the characterized anode V-I curve, output power (the t...