Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
- Raden, M.
- Ali, S.
- Alkhnbashi, O.
- Busch, A.
- Costa, F.
- Davis, J.
- Eggenhofer, F.
- Gelhausen, R.
- Georg, J.
- Heyne, S.
- Hiller, M.
- Kundu, K.
- Kleinkauf, R.
- Lott, S.
- Mohamed, M.
- Mattheis, A.
- Miladi, M.
- Richter, A.
- Will, S.
- Wolff, J.
- Wright, P.
- Backofen, R.
DOIAbstract
The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced se...
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