Add to ORKGBackground: Strategies for imputing genotypes from the Illumina-Bovine3K, Illumina-BovineLD (6K), BeefLD-GGP (8K), a non-commercial-15K and IndicusLD-GGP (20K) to either Illumina-BovineSNP50 (50K) or to Illumina-BovineHD (777K) SNP panel, as well as for imputing from 50K, GGP-IndicusHD (90iK) and GGP-BeefHD (90tK) to 777K were investigated. Imputation of low density (<50K) genotypes to 777K was carried out in either one or two steps. Imputation of ungenotyped parents (n = 37 sires) with four or more offspring to the 50K panel was also assessed. There were 2,946 Braford, 664 Hereford and 88 Nellore animals, from which 71, 59 and 88 were genotyped with the 777K panel, while all others had 50K genotypes. The reference population was comprised ...
The imputation from lower density SNP chip genotypes to whole-genome sequence level is an establishe...
Background: We investigated strategies and factors affecting accuracy of imputing genotypes from low...
Genotype imputation is widely used as a cost-effective strategy in genomic evaluation of cattle. Key...
Background: Strategies for imputing genotypes from the Illumina-Bovine3K, Illumina-BovineLD (6K), Be...
Background Currently, genome-wide evaluation of cattle populations is based on SNP-genotyping using...
The imputation from lower density SNP chip genotypes to whole-genome sequence level is an establishe...
Imputation of genotypes can be used to reduce the implementation costs of genomic selection. In this...
Background: The use of whole-genome sequence data can lead to higher accuracy in genome-wide associa...
AbstractThis study investigated the imputation accuracy of different methods, considering both the m...
The main objective of this research was to test alternative low density SNP panels to impute Illumin...
Background Imputation accuracy among other things depends on the size of the reference panel, the m...
The use of whole-genome sequence data can lead to more accurate genomic predictions in animal and pl...
International audienceAbstractBackgroundThe availability of dense genotypes and whole-genome sequenc...
Genotype imputation has been used to increase genomic information, allow more animals in genome-wide...
Background: Genotyping with the medium-density Bovine SNP50 BeadChip(R) (50K) is now standard in cat...
The imputation from lower density SNP chip genotypes to whole-genome sequence level is an establishe...
Background: We investigated strategies and factors affecting accuracy of imputing genotypes from low...
Genotype imputation is widely used as a cost-effective strategy in genomic evaluation of cattle. Key...
Background: Strategies for imputing genotypes from the Illumina-Bovine3K, Illumina-BovineLD (6K), Be...
Background Currently, genome-wide evaluation of cattle populations is based on SNP-genotyping using...
The imputation from lower density SNP chip genotypes to whole-genome sequence level is an establishe...
Imputation of genotypes can be used to reduce the implementation costs of genomic selection. In this...
Background: The use of whole-genome sequence data can lead to higher accuracy in genome-wide associa...
AbstractThis study investigated the imputation accuracy of different methods, considering both the m...
The main objective of this research was to test alternative low density SNP panels to impute Illumin...
Background Imputation accuracy among other things depends on the size of the reference panel, the m...
The use of whole-genome sequence data can lead to more accurate genomic predictions in animal and pl...
International audienceAbstractBackgroundThe availability of dense genotypes and whole-genome sequenc...
Genotype imputation has been used to increase genomic information, allow more animals in genome-wide...
Background: Genotyping with the medium-density Bovine SNP50 BeadChip(R) (50K) is now standard in cat...
The imputation from lower density SNP chip genotypes to whole-genome sequence level is an establishe...
Background: We investigated strategies and factors affecting accuracy of imputing genotypes from low...
Genotype imputation is widely used as a cost-effective strategy in genomic evaluation of cattle. Key...