predsim is a simple command-line tool for simulating predictive datasets from MrBayes output files. Datasets can be simulated under the GTR+G+I substitution model or any nested variant available in MrBayes (JC69, HKY85 etc.). The code is contained within a single module that can also be imported using Python's import mechanism. It uses Seq-Gen for simulating the DNA-sequences and builds on the third-party library DendroPy. The code has been tested with Python 2.7 and 3.6. Source repository: https://github.com/jmenglund/predsim This minor release make it possible to output data to the PHYLIP format and fixes a bug in reading the p-file
Genomic simulations are an important technique used in population genetics to infer demographic hist...
UNLABELLED: SelSim is a program for Monte Carlo simulation of DNA polymorphism data for a recombinin...
Patterns of DNA sequence polymorphisms can be used to understand the processes of demography and ada...
predsim is a simple command-line tool for simulating predictive datasets from MrBayes output files. ...
<p>predsim is a command-line tool for simulating predictive datasets from MrBayes output files. Data...
Added MMX implementation of the SIMD prefilter. Proper GFF headers and metadata section to GFF outp...
Background: Genomic prediction (GP) is a method whereby DNA polymorphism information is used to pred...
gs pa d to th, M for decades. Recently, many novel findings in genomic Implementation Zhang et al. B...
Gene expression is regulated through cis-regulatory elements (CREs), among which are promoters, enha...
Highly accurate genotyping is essential for genomic projects aimed at understanding the etiology of ...
We introduce Pyvolve, a flexible Python module for simulating genetic data along a phylogeny accordi...
Simulated data created using the QMSim software. Three genetic architecture types were simulated eac...
R script to run PPI-based MR simulations. Using a SNP-to-Gene dictionary, simulated clusters of gene...
Python code, Jupyter Notebooks and data for reproducing the work of the scientific paper "Predicting...
We introduce Pyvolve, a flexible Python module for simulating genetic data along a phylogeny using c...
Genomic simulations are an important technique used in population genetics to infer demographic hist...
UNLABELLED: SelSim is a program for Monte Carlo simulation of DNA polymorphism data for a recombinin...
Patterns of DNA sequence polymorphisms can be used to understand the processes of demography and ada...
predsim is a simple command-line tool for simulating predictive datasets from MrBayes output files. ...
<p>predsim is a command-line tool for simulating predictive datasets from MrBayes output files. Data...
Added MMX implementation of the SIMD prefilter. Proper GFF headers and metadata section to GFF outp...
Background: Genomic prediction (GP) is a method whereby DNA polymorphism information is used to pred...
gs pa d to th, M for decades. Recently, many novel findings in genomic Implementation Zhang et al. B...
Gene expression is regulated through cis-regulatory elements (CREs), among which are promoters, enha...
Highly accurate genotyping is essential for genomic projects aimed at understanding the etiology of ...
We introduce Pyvolve, a flexible Python module for simulating genetic data along a phylogeny accordi...
Simulated data created using the QMSim software. Three genetic architecture types were simulated eac...
R script to run PPI-based MR simulations. Using a SNP-to-Gene dictionary, simulated clusters of gene...
Python code, Jupyter Notebooks and data for reproducing the work of the scientific paper "Predicting...
We introduce Pyvolve, a flexible Python module for simulating genetic data along a phylogeny using c...
Genomic simulations are an important technique used in population genetics to infer demographic hist...
UNLABELLED: SelSim is a program for Monte Carlo simulation of DNA polymorphism data for a recombinin...
Patterns of DNA sequence polymorphisms can be used to understand the processes of demography and ada...