Test of models for replication of simian virus 40 DNA following ultraviolet irradiation

When mammalian cells are irradiated with ultraviolet light, semiconservative DNA replication is inhibited and the length of newly synthesized daughter strands is reduced. We have used the simian virus 40 (SV40) viral system to examine the molecular mechanism by which this inhibition of DNA replication occurs immediately following ultraviolet irradiation. We tested two models for DNA replication-inhibition by using a procedure first developed by Danna, K. J., and D. Nathans (1972, Proc. Natl. Acad. Sci. USA, 69:3097–3100) in which the distribution of 3H-label in segments of newly completed SV40 form-I molecules is measured after short pulse labeling with 3H-thymidine. Our experimental results were compared with those predicted by mathematical models that describe two possible molecular mechanisms of replication inhibition. Our data are best fit by a "blockage" model in which any pyrimidine dimer encountered by the replication fork prevents complete replication of the SV40 genome. An alternative model called "slowdown" in which DNA damage causes a generalized slowdown of replication fork movement on all genomes has more adjustable parameters but does not fit the data as well as the blockage model