Background: Organic manures are the source of many pathogenic bacteria which could be dangerous for human health. Bacterial transmission and retention in soil is important for processes ranging from contaminant degradation during in situ bioremediation to transport of pathogenic bacteria into groundwater. Methods: The aim of this study was to evaluate the transport of Escherichia coli and chloride (Cl) in the soil saturation conditions, considering the importance of preferential flow using synthetic macrospores (different diameters of macrospores including 0, 1 and 2 cm) and HYDRUS-2D model. Also, the effect of different salinity levels of water (including electrical conductivity of 1, 2 and 4 dSm-1) on the transmission of E. coli w...