Perfect structural periodicity is disturbed in presence of imperfections. The present paper is based on a realistic modeling of imperfections, using uncertainties, to investigate the robustness of the collective nonlinear dynamics of a periodic coupled pendulums chain. A generic discrete analytical model combining multiple scales method and standing-wave decomposition is proposed. To propagate uncertainties through the established model, the generalized Polynomial Chaos Expansion is used and compared to the Latin Hypercube Sampling method. Effects of uncertainties are investigated on the stability and nonlinearity of two and three coupled pendulums chains. Results prove the satisfying approximation given by the generalized Polynomial Chaos ...