Development and validation of a GC–MS method for soybean organ-specific metabolomics

Field mold (FM) can easily deteriorate the preharvest soybean in the field, and Fusarium moniliforme is demonstrated as the dominant pathogenic fungi. Metabolomics is a powerful tool to reveal the resistance mechanism in response to microbial infection. Therefore, in this research, the Design of Experiment (DOE) model was developed to optimize the extraction solvent combinations for metabolomic study of soybean seed and pod based on gas chromatography–mass spectrometry (GC–MS). Combined with the number of extracted peaks and the peak area of common substances, the extraction efficiency of different solvent was analyzed by multivariate statistical analysis. The result showed that isopropanol/water/methanol (1:1:1 and 1:1:4, v/v/v) mixture was highly efficient for metabolites extractions of soybean seed and pod, respectively. Additionally, the potential metabolites and pathways concerned in FM resistance were explored by the optimized extraction solvent system based on metabolomics analysis. Amino acid metabolism in soybean seed was disturbed by F. moniliforme and metabolic pathways related to energy conversion in soybean pod strongly responded to fungal infection. This study constructs a GC–MS-based metabonomic method for soybean metabolites; comparative analysis of organ-specific metabolomics for soybean fruit could be further applied in soybean metabolomics researches