Abstract Background Using a microbial fuel cell (MFC), we observed that a complex microbial community decomposed starch and transferred electrons to a graphite felt anode to generate current. In spite of the same reactor configuration, inoculum, substrate, temperature, and pH, MFCs produced different current and power density. To understand which factor(s) affected electricity generation, here, we analyzed a complex microbial community in an anodic biofilm and fermentation broth using Illumina MiSeq sequencing and metabolomics. Results Microbial biomass on the anode was lower in MFCs generating more electricity (0.09–0.16 mg cm−2-anode) than in those generating less electricity (0.60–2.80 mg cm−2-anode), while being equal (3890–4196 mg L−1-...