Systems that exhibit complex behaviours often contain inherent dynamical structures which evolve over time in a coordinated way. In this paper, we present a methodology based on the Relevance Index method aimed at revealing the dynamical structures hidden in complex systems. The method iterates two basic steps: detection of relevant variable sets based on the computation of the Relevance Index, and application of a sieving algorithm, which refines the results. This approach is able to highlight the organization of a complex system into sets of variables, which interact with one another at different hierarchical levels, detected, in turn, in the different iterations of the sieve. The method can be applied directly to systems composed of a sm...