Additional file 2: of C-reactive protein and procalcitonin to discriminate between tuberculosis, Pneumocystis jirovecii pneumonia, and bacterial pneumonia in HIV-infected inpatients meeting WHO criteria for seriously ill: a prospective cohort study

Fiona Mendelson (5632640)
Rulan Griesel (3403949)
Nicki Tiffin (8683)
Molebogeng Rangaka (5632643)
Andrew Boulle (93997)
Marc Mendelson (284110)
Gary Maartens (60752)

Open link

Publication date

August 2018

DOI

10.6084/m9.figshare.6968630.v1

Abstract

Baseline characteristics including participants with mixed infection. (PDF 105 kb

Extracted data

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Data Protection

Additional file 2: of C-reactive protein and procalcitonin to discriminate between tuberculosis, Pneumocystis jirovecii pneumonia, and bacterial pneumonia in HIV-infected inpatients meeting WHO criteria for seriously ill: a prospective cohort study

Fiona Mendelson (5632640)
Rulan Griesel (3403949)
Nicki Tiffin (8683)
Molebogeng Rangaka (5632643)
Andrew Boulle (93997)
Marc Mendelson (284110)
Gary Maartens (60752)

Open link

Publication date

August 2018

DOI

10.6084/m9.figshare.6968630.v1

Abstract

Baseline characteristics including participants with mixed infection. (PDF 105 kb

Extracted data

Giselle Klautau (5055842)
Nadijane da Mota (5991023)
Mauro Salles (5055839)
Marcelo Burattini (5991026)
Denise Rodrigues (5991029)

November 2018

Figure S1. ROC curve for IGRA according to the risk of infection with TB in HIV-infected patients at...

Diagnostic accuracy of C-reactive protein and procalcitonin, compared with composite reference standards, to discriminate between tuberculosis, Pneumocystis jirovecii pneumonia and bacterial pneumonia in HIV-infected inpatients meeting WHO criteria for seriously ill

Mendelson, Fiona

February 2019

Tuberculosis, bacterial community-acquired pneumonia (CAP), and Pneumocystis jirovecii pneumonia (PJ...

Additional file 1: of Gut microbiota in HIVâpneumonia patients is related to peripheral CD4 counts, lung microbiota, and in vitro macrophage dysfunction

Meera Shenoy (6447014)
Douglas Fadrosh (38232)
Din Lin (6447017)
William Worodria (121839)
Patrick Byanyima (298398)
Emmanuel Musisi (3131010)
Sylvia Kaswabuli (121843)
Josephine Zawedde (6447020)
Ingvar Sanyu (737079)
Emily Chang (590706)
Serena Fong (235542)
Kathryn McCauley (6447023)
J. Davis (3505127)
Laurence Huang (121862)
Susan Lynch (3459173)

March 2019

Supplemental Methods: Rscripts. Figure S1. DESEq2 normalization confirms body habitat specificity of...

Additional file 1: of C-reactive protein and procalcitonin to discriminate between tuberculosis, Pneumocystis jirovecii pneumonia, and bacterial pneumonia in HIV-infected inpatients meeting WHO criteria for seriously ill: a prospective cohort study

Fiona Mendelson (5632640)
Rulan Griesel (3403949)
Nicki Tiffin (8683)
Molebogeng Rangaka (5632643)
Andrew Boulle (93997)
Marc Mendelson (284110)
Gary Maartens (60752)

August 2018

Power calculations. Table S1. Power calculation for sensitivity estimates for each target infection....

Additional file 1: of Diagnostic accuracy of C-reactive protein and procalcitonin in suspected community-acquired pneumonia adults visiting emergency department and having a systematic thoracic CT scan

Josselin Le Bel (3576548)
Pierre Hausfater (84305)
Camille Chenevier-Gobeaux (3576554)
FranĂ§ois-Xavier Blanc (3576563)
Mikhael Benjoar (3576557)
CĂŠcile Ficko (3576560)
Patrick Ray (30760)
Christophe Choquet (131012)
Xavier Duval (134550)
Yann-Erick Claessens (2283)

October 2015

Descriptions of biomarker analysis methods and Multiplex PCR methods. (DOC 24Â kb

Additional file 4: of Diagnostic accuracy of C-reactive protein and procalcitonin in suspected community-acquired pneumonia adults visiting emergency department and having a systematic thoracic CT scan

Josselin Le Bel (3576548)
Pierre Hausfater (84305)
Camille Chenevier-Gobeaux (3576554)
FranĂ§ois-Xavier Blanc (3576563)
Mikhael Benjoar (3576557)
CĂŠcile Ficko (3576560)
Patrick Ray (30760)
Christophe Choquet (131012)
Xavier Duval (134550)
Yann-Erick Claessens (2283)

October 2015

C-reactive protein and procalcitonin ROC curves predicting definite community-acquired pneumonia dia...

C-reactive protein and procalcitonin to discriminate between tuberculosis, Pneumocystis jirovecii pneumonia, and bacterial pneumonia in HIV-infected inpatients meeting WHO criteria for seriously ill: a prospective cohort study

Fiona Mendelson
Rulan Griesel
Nicki Tiffin
Molebogeng Rangaka
Andrew Boulle
Marc Mendelson
Gary Maartens

August 2018

Abstract Background Tuberculosis, bacterial community-acquired pneumonia (CAP), and Pneumocystis jir...

Additional file 1: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S1. Biomarker loadings for each factor in primary CTF analysis (Nâ=â290). (DOCX 18 kb

Additional file 2: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S2. Biomarker loadings for factors in severe outcomes analysis (Nâ=â254). (DOCX 15 kb

Additional file 4: of Infection biomarkers in primary care patients with acute respiratory tract infectionsâcomparison of Procalcitonin and C-reactive protein

Marc Meili (3510059)
Alexander Kutz (3172095)
Matthias Briel (120543)
Mirjam Christ-Crain (15611)
Heiner Bucher (3510056)
Beat Mueller (300968)
Philipp Schuetz (33688)

March 2016

Biomarker at baseline and day seven as predictors for days with restricted activities or persistence...

Mendelson, Fiona
Griesel, Rulan
Tiffin, Nicki
Rangaka, Molebogeng
Boulle, Andrew
Mendelson, Marc
Maartens, Gary

August 2018

Background Tuberculosis, bacterial community-acquired pneumonia (CAP), and Pneumocy...

Additional file 2: Figures S1 and S2. of Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection

Sushma Cribbs (3528416)
Karan Uppal (407054)
Shuzhao Li (180028)
Dean Jones (376526)
Laurence Huang (121862)
Laura Tipton (3495956)
Adam Fitch (130508)
Ruth Greenblatt (365832)
Lawrence Kingsley (388233)
David Guidot (3528413)
Elodie Ghedin (8860)
Alison Morris (371631)

January 2016

Figure S1. Receiver operating characteristic (ROC) curve using the top discriminatory features betwe...

Additional file 1: of Combination of clinical symptoms and blood biomarkers can improve discrimination between bacterial or viral community-acquired pneumonia in children

Mejbah Bhuiyan (5707649)
Christopher Blyth (3400388)
Rachel West (3481319)
Jurissa Lang (6547820)
Tasmina Rahman (654359)
Caitlyn Granland (6547823)
Camilla Gier (6547826)
Meredith Borland (4848250)
Ruth Thornton (4037795)
Lea-Ann Kirkham (174975)
Andrew Martin (43126)
Peter Richmond (365592)
David Smith (37222)
Adam Jaffe (313619)
Thomas Snelling (6547829)

April 2019

Table S1 shows the distribution of four common respiratory bacteria detected by PCR in the nasophary...

Additional file 2: of Combination of clinical symptoms and blood biomarkers can improve discrimination between bacterial or viral community-acquired pneumonia in children

Mejbah Bhuiyan (5707649)
Christopher Blyth (3400388)
Rachel West (3481319)
Jurissa Lang (6547820)
Tasmina Rahman (654359)
Caitlyn Granland (6547823)
Camilla Gier (6547826)
Meredith Borland (4848250)
Ruth Thornton (4037795)
Lea-Ann Kirkham (174975)
Andrew Martin (43126)
Peter Richmond (365592)
David Smith (37222)
Adam Jaffe (313619)
Thomas Snelling (6547829)

April 2019

Figure S1 A. ROC curve for blood WCC concentration for differentiating definite bacterial pneumonia ...

Additional file 1: of The utility of initial procalcitonin and procalcitonin clearance for prediction of bacterial infection and outcome in critically ill patients with autoimmune diseases: a prospective observational study

Yan Shi (166398)
Jin-min Peng (3433961)
Xiao-yun Hu (3433964)
Yao Wang (102387)

October 2015

Additional etiological findings in the patients with or without bacterial infection. (DOCX 15 kb

Additional file 1: of Interferon-γ release assay as a sensitive diagnostic tool of latent tuberculosis infection in patients with HIV: a cross-sectional study

Giselle Klautau (5055842)
Nadijane da Mota (5991023)
Mauro Salles (5055839)
Marcelo Burattini (5991026)
Denise Rodrigues (5991029)

November 2018

Figure S1. ROC curve for IGRA according to the risk of infection with TB in HIV-infected patients at...

Mendelson, Fiona

February 2019

Tuberculosis, bacterial community-acquired pneumonia (CAP), and Pneumocystis jirovecii pneumonia (PJ...

Additional file 1: of Gut microbiota in HIVâpneumonia patients is related to peripheral CD4 counts, lung microbiota, and in vitro macrophage dysfunction

Meera Shenoy (6447014)
Douglas Fadrosh (38232)
Din Lin (6447017)
William Worodria (121839)
Patrick Byanyima (298398)
Emmanuel Musisi (3131010)
Sylvia Kaswabuli (121843)
Josephine Zawedde (6447020)
Ingvar Sanyu (737079)
Emily Chang (590706)
Serena Fong (235542)
Kathryn McCauley (6447023)
J. Davis (3505127)
Laurence Huang (121862)
Susan Lynch (3459173)

March 2019

Supplemental Methods: Rscripts. Figure S1. DESEq2 normalization confirms body habitat specificity of...

Fiona Mendelson (5632640)
Rulan Griesel (3403949)
Nicki Tiffin (8683)
Molebogeng Rangaka (5632643)
Andrew Boulle (93997)
Marc Mendelson (284110)
Gary Maartens (60752)

August 2018

Power calculations. Table S1. Power calculation for sensitivity estimates for each target infection....

Josselin Le Bel (3576548)
Pierre Hausfater (84305)
Camille Chenevier-Gobeaux (3576554)
FranĂ§ois-Xavier Blanc (3576563)
Mikhael Benjoar (3576557)
CĂŠcile Ficko (3576560)
Patrick Ray (30760)
Christophe Choquet (131012)
Xavier Duval (134550)
Yann-Erick Claessens (2283)

October 2015

Descriptions of biomarker analysis methods and Multiplex PCR methods. (DOC 24Â kb

Josselin Le Bel (3576548)
Pierre Hausfater (84305)
Camille Chenevier-Gobeaux (3576554)
FranĂ§ois-Xavier Blanc (3576563)
Mikhael Benjoar (3576557)
CĂŠcile Ficko (3576560)
Patrick Ray (30760)
Christophe Choquet (131012)
Xavier Duval (134550)
Yann-Erick Claessens (2283)

October 2015

C-reactive protein and procalcitonin ROC curves predicting definite community-acquired pneumonia dia...

Fiona Mendelson
Rulan Griesel
Nicki Tiffin
Molebogeng Rangaka
Andrew Boulle
Marc Mendelson
Gary Maartens

August 2018

Abstract Background Tuberculosis, bacterial community-acquired pneumonia (CAP), and Pneumocystis jir...

Additional file 1: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S1. Biomarker loadings for each factor in primary CTF analysis (Nâ=â290). (DOCX 18 kb

Additional file 2: of Inflammation and micronutrient biomarkers predict clinical HIV treatment failure and incident active TB in HIV-infected adults: a case-control study

Rupak Shivakoti (5780642)
Nikhil Gupte (189999)
Srikanth Tripathy (143767)
Selvamuthu Poongulali (5780645)
Cecilia Kanyama (504116)
Sima Berendes (224927)
Sandra Cardoso (3765325)
Breno Santos (504115)
Alberto La Rosa (504114)
Noluthando Mwelase (696354)
Sandy Pillay (696352)
Wadzanai Samaneka (621063)
Cynthia Riviere (143755)
Patcharaphan Sugandhavesa (584460)
Robert Bollinger (375260)
Ashwin Balagopal (19837)
Richard Semba (4596058)
Parul Christian (548336)
Thomas Campbell (5301196)
Amita Gupta (21762)

September 2018

Table S2. Biomarker loadings for factors in severe outcomes analysis (Nâ=â254). (DOCX 15 kb

Additional file 4: of Infection biomarkers in primary care patients with acute respiratory tract infectionsâcomparison of Procalcitonin and C-reactive protein

Marc Meili (3510059)
Alexander Kutz (3172095)
Matthias Briel (120543)
Mirjam Christ-Crain (15611)
Heiner Bucher (3510056)
Beat Mueller (300968)
Philipp Schuetz (33688)

March 2016

Biomarker at baseline and day seven as predictors for days with restricted activities or persistence...

Mendelson, Fiona
Griesel, Rulan
Tiffin, Nicki
Rangaka, Molebogeng
Boulle, Andrew
Mendelson, Marc
Maartens, Gary

August 2018

Background Tuberculosis, bacterial community-acquired pneumonia (CAP), and Pneumocy...

Additional file 2: Figures S1 and S2. of Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection

Sushma Cribbs (3528416)
Karan Uppal (407054)
Shuzhao Li (180028)
Dean Jones (376526)
Laurence Huang (121862)
Laura Tipton (3495956)
Adam Fitch (130508)
Ruth Greenblatt (365832)
Lawrence Kingsley (388233)
David Guidot (3528413)
Elodie Ghedin (8860)
Alison Morris (371631)

January 2016

Figure S1. Receiver operating characteristic (ROC) curve using the top discriminatory features betwe...

Additional file 1: of Combination of clinical symptoms and blood biomarkers can improve discrimination between bacterial or viral community-acquired pneumonia in children

Mejbah Bhuiyan (5707649)
Christopher Blyth (3400388)
Rachel West (3481319)
Jurissa Lang (6547820)
Tasmina Rahman (654359)
Caitlyn Granland (6547823)
Camilla Gier (6547826)
Meredith Borland (4848250)
Ruth Thornton (4037795)
Lea-Ann Kirkham (174975)
Andrew Martin (43126)
Peter Richmond (365592)
David Smith (37222)
Adam Jaffe (313619)
Thomas Snelling (6547829)

April 2019

Table S1 shows the distribution of four common respiratory bacteria detected by PCR in the nasophary...

Additional file 2: of Combination of clinical symptoms and blood biomarkers can improve discrimination between bacterial or viral community-acquired pneumonia in children

Mejbah Bhuiyan (5707649)
Christopher Blyth (3400388)
Rachel West (3481319)
Jurissa Lang (6547820)
Tasmina Rahman (654359)
Caitlyn Granland (6547823)
Camilla Gier (6547826)
Meredith Borland (4848250)
Ruth Thornton (4037795)
Lea-Ann Kirkham (174975)
Andrew Martin (43126)
Peter Richmond (365592)
David Smith (37222)
Adam Jaffe (313619)
Thomas Snelling (6547829)

April 2019

Figure S1 A. ROC curve for blood WCC concentration for differentiating definite bacterial pneumonia ...

Yan Shi (166398)
Jin-min Peng (3433961)
Xiao-yun Hu (3433964)
Yao Wang (102387)

October 2015

Additional etiological findings in the patients with or without bacterial infection. (DOCX 15 kb

Additional file 1: of Interferon-γ release assay as a sensitive diagnostic tool of latent tuberculosis infection in patients with HIV: a cross-sectional study

Giselle Klautau (5055842)
Nadijane da Mota (5991023)
Mauro Salles (5055839)
Marcelo Burattini (5991026)
Denise Rodrigues (5991029)

November 2018

Figure S1. ROC curve for IGRA according to the risk of infection with TB in HIV-infected patients at...

Mendelson, Fiona

February 2019

Tuberculosis, bacterial community-acquired pneumonia (CAP), and Pneumocystis jirovecii pneumonia (PJ...

Additional file 1: of Gut microbiota in HIVâpneumonia patients is related to peripheral CD4 counts, lung microbiota, and in vitro macrophage dysfunction

Meera Shenoy (6447014)
Douglas Fadrosh (38232)
Din Lin (6447017)
William Worodria (121839)
Patrick Byanyima (298398)
Emmanuel Musisi (3131010)
Sylvia Kaswabuli (121843)
Josephine Zawedde (6447020)
Ingvar Sanyu (737079)
Emily Chang (590706)
Serena Fong (235542)
Kathryn McCauley (6447023)
J. Davis (3505127)
Laurence Huang (121862)
Susan Lynch (3459173)

March 2019

Supplemental Methods: Rscripts. Figure S1. DESEq2 normalization confirms body habitat specificity of...

Additional file 2: of C-reactive protein and procalcitonin to discriminate between tuberculosis, Pneumocystis jirovecii pneumonia, and bacterial pneumonia in HIV-infected inpatients meeting WHO criteria for seriously ill: a prospective cohort study

Abstract

Extracted data

Additional file 2: of C-reactive protein and procalcitonin to discriminate between tuberculosis, Pneumocystis jirovecii pneumonia, and bacterial pneumonia in HIV-infected inpatients meeting WHO criteria for seriously ill: a prospective cohort study

Abstract

Extracted data

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