Additional file 2: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Additional file 2 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 2: Fig. S2: Morphological characteristics of flower organs at three flower developme...

Additional file 6: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S3. Cluster of orthologous groups (COG) analysis of all unigenes. (TIF 1749 kb

Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai
Chun Liu
Shuwei Yu
Hua Yang
Jiameng Sun
Chunxiao Guo
Bei Huang
Zhaoye Liu
Yi Yuan
Enhua Xia
Chaoling Wei
Xiaochun Wan

August 2018

Abstract Background The leaves of tea plants (Camellia sinensis) are used to produce tea, which is o...

Additional file 3: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai (3410630)
Chun Liu (47227)
Shuwei Yu (5636075)
Hua Yang (120668)
Jiameng Sun (5636078)
Chunxiao Guo (5518769)
Bei Huang (485021)
Zhaoye Liu (5636081)
Yi Yuan (180239)
Enhua Xia (5636084)
Chaoling Wei (408278)
Xiaochun Wan (408279)

August 2018

Functional analysis of unigenes in blue, red and magenta modules enriched in the photosynthesis path...

Additional file 5: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai (3410630)
Chun Liu (47227)
Shuwei Yu (5636075)
Hua Yang (120668)
Jiameng Sun (5636078)
Chunxiao Guo (5518769)
Bei Huang (485021)
Zhaoye Liu (5636081)
Yi Yuan (180239)
Enhua Xia (5636084)
Chaoling Wei (408278)
Xiaochun Wan (408279)

August 2018

Unigene IDs and primer sequences for selected transcripts used for qPCR validation. (XLSX 9 kb

Additional file 2: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

Statistical comparison of DEGs between any two tissues. The genes were classified into three classes...

Additional file 1: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S1. Phenotype of original tea plants. (A): “Wei shuo” ‘Tieguanyin’ (Camellia sinensis cv. ‘Ti...

Additional file 3: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

The rich factors and number of genes involved in each pathway derived from a comparison of gene expr...

Additional file 1: of Global dissection of alternative splicing uncovers transcriptional diversity in tissues and associates with the flavonoid pathway in tea plant (Camellia sinensis)

Junyan Zhu (1821352)
Xuewen Wang (1900867)
Qingshan Xu (5648453)
Shiqi Zhao (5939993)
Yuling Tai (3410630)
Chaoling Wei (408278)

November 2018

Figure S1. Hierarchical cluster tree showing co-expression modules identified by WGCNA. Figure S2. T...

Additional file 8: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S5. Hierarchical clustering analysis of relative expression levels of differentially expresse...

Additional file 3: of Metabolite profiling and transcriptomic analyses reveal an essential role of UVR8-mediated signal transduction pathway in regulating flavonoid biosynthesis in tea plants (Camellia sinensis) in response to shading

Linlin Liu (426425)
Yingying Li (50341)
Guangbiao She (3071205)
Xianchen Zhang (5852438)
Brian Jordan (2639524)
Qi Chen (144168)
Jian Zhao (219525)
Xiaochun Wan (408279)

October 2018

Transcript abundance of main genes involved in the flavonoid biosynthetic pathway annotated in tea t...

Additional file 3: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Table S2. Main biological characteristics of TGY (Wei), TGY (Wang), and BS. (DOC 37 kb

Additional file 7: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S4. Number of transcription factors (TFs) identified in TGY (Wei), TGY (Wang), and BS. (TIF 1...

Additional file 1: of Two MYB transcription factors (CsMYB2 and CsMYB26) are involved in flavonoid biosynthesis in tea plant [Camellia sinensis (L.) O. Kuntze]

Wen-Li Wang (4534894)
Yong-Xin Wang (5997932)
Hui Li (32376)
Zhi-Wei Liu (1779475)
Xin Cui (1610701)
Jing Zhuang (49956)

December 2018

Putative cis-acting regulatory elements of CsMYB2, CsMYB26 and the structural genes involved in the ...

Additional file 9: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Table S4. Differentially expressed genes (DEGs) related to limonene metabolic pathways in TGY (Wei),...

Additional file 2 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 2: Fig. S2: Morphological characteristics of flower organs at three flower developme...

Additional file 6: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S3. Cluster of orthologous groups (COG) analysis of all unigenes. (TIF 1749 kb

Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai
Chun Liu
Shuwei Yu
Hua Yang
Jiameng Sun
Chunxiao Guo
Bei Huang
Zhaoye Liu
Yi Yuan
Enhua Xia
Chaoling Wei
Xiaochun Wan

August 2018

Abstract Background The leaves of tea plants (Camellia sinensis) are used to produce tea, which is o...

Additional file 3: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai (3410630)
Chun Liu (47227)
Shuwei Yu (5636075)
Hua Yang (120668)
Jiameng Sun (5636078)
Chunxiao Guo (5518769)
Bei Huang (485021)
Zhaoye Liu (5636081)
Yi Yuan (180239)
Enhua Xia (5636084)
Chaoling Wei (408278)
Xiaochun Wan (408279)

August 2018

Functional analysis of unigenes in blue, red and magenta modules enriched in the photosynthesis path...

Additional file 5: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai (3410630)
Chun Liu (47227)
Shuwei Yu (5636075)
Hua Yang (120668)
Jiameng Sun (5636078)
Chunxiao Guo (5518769)
Bei Huang (485021)
Zhaoye Liu (5636081)
Yi Yuan (180239)
Enhua Xia (5636084)
Chaoling Wei (408278)
Xiaochun Wan (408279)

August 2018

Unigene IDs and primer sequences for selected transcripts used for qPCR validation. (XLSX 9 kb

Additional file 2: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

Statistical comparison of DEGs between any two tissues. The genes were classified into three classes...

Additional file 1: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S1. Phenotype of original tea plants. (A): “Wei shuo” ‘Tieguanyin’ (Camellia sinensis cv. ‘Ti...

Additional file 3: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

The rich factors and number of genes involved in each pathway derived from a comparison of gene expr...

Additional file 1: of Global dissection of alternative splicing uncovers transcriptional diversity in tissues and associates with the flavonoid pathway in tea plant (Camellia sinensis)

Junyan Zhu (1821352)
Xuewen Wang (1900867)
Qingshan Xu (5648453)
Shiqi Zhao (5939993)
Yuling Tai (3410630)
Chaoling Wei (408278)

November 2018

Figure S1. Hierarchical cluster tree showing co-expression modules identified by WGCNA. Figure S2. T...

Additional file 8: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S5. Hierarchical clustering analysis of relative expression levels of differentially expresse...

Additional file 3: of Metabolite profiling and transcriptomic analyses reveal an essential role of UVR8-mediated signal transduction pathway in regulating flavonoid biosynthesis in tea plants (Camellia sinensis) in response to shading

Linlin Liu (426425)
Yingying Li (50341)
Guangbiao She (3071205)
Xianchen Zhang (5852438)
Brian Jordan (2639524)
Qi Chen (144168)
Jian Zhao (219525)
Xiaochun Wan (408279)

October 2018

Transcript abundance of main genes involved in the flavonoid biosynthetic pathway annotated in tea t...

Additional file 3: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Table S2. Main biological characteristics of TGY (Wei), TGY (Wang), and BS. (DOC 37 kb

Additional file 7: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S4. Number of transcription factors (TFs) identified in TGY (Wei), TGY (Wang), and BS. (TIF 1...

Additional file 1: of Two MYB transcription factors (CsMYB2 and CsMYB26) are involved in flavonoid biosynthesis in tea plant [Camellia sinensis (L.) O. Kuntze]

Wen-Li Wang (4534894)
Yong-Xin Wang (5997932)
Hui Li (32376)
Zhi-Wei Liu (1779475)
Xin Cui (1610701)
Jing Zhuang (49956)

December 2018

Putative cis-acting regulatory elements of CsMYB2, CsMYB26 and the structural genes involved in the ...

Additional file 9: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Table S4. Differentially expressed genes (DEGs) related to limonene metabolic pathways in TGY (Wei),...

Additional file 2 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 2: Fig. S2: Morphological characteristics of flower organs at three flower developme...

Additional file 6: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S3. Cluster of orthologous groups (COG) analysis of all unigenes. (TIF 1749 kb

Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai
Chun Liu
Shuwei Yu
Hua Yang
Jiameng Sun
Chunxiao Guo
Bei Huang
Zhaoye Liu
Yi Yuan
Enhua Xia
Chaoling Wei
Xiaochun Wan

August 2018

Abstract Background The leaves of tea plants (Camellia sinensis) are used to produce tea, which is o...

Additional file 2: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Abstract

Extracted data

Additional file 2: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Abstract

Extracted data

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