(A) iHS analysis (B) Rsb analysis with the African taurine N’Dama cattle and (C) Rsb analysis with the Asian zebu Nelore cattle. The significance threshold is set at–log10 (two-tailed P-value for iHS analysis) and (one-tailed P-value for Rsb analysis) = 3.</p
Signatures of positive selection in the genome are a characteristic mark of adaptation that can reve...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>SNPs are plotted on the x-axis according to their position on each chromosome against association...
The significance threshold is set at the top 1% of the Fst values distribution tail.</p
<p>two-tailed Z-test is applied and the significance threshold is set at–log<sub>10</sub> (two-taile...
<p>A. Genome-wide Manhattan plot obtained by across-breed single-point analysis for an index combini...
The absolute values of iHS for each SNP are plotted on the vertical axis, with red and blue lines dr...
<p>Plots over the genome of the SEN iHS (a) and ZEB/SEN (b) and EUT/CGU (c) Rsb scores for each SNP....
Genome-wide summary stats for modified iHS scan in 1KG as reported in: Patterns of shared signature...
<p>The Manhattan plot shows nominal <i>P</i>-values from association with mean corpuscular hemoglobi...
Additional file 2: Figure S1. Decay of r2 as a function of physical distance on chromosomes 11 and 1...
<p>The results of the genome-wide association analysis are shown for chromosomes 1 through 29 and th...
<p>A) Discovery data (2,657 windows) B) Combined data (2,656 windows). Y-axis represents the proport...
<p>Odds Ratio, 95% confidence interval, and p value are reported for each threshold investigated.</p
Manhattan plot showing–log10 (P-values) of association between each single nucleotide polymorphism e...
Signatures of positive selection in the genome are a characteristic mark of adaptation that can reve...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>SNPs are plotted on the x-axis according to their position on each chromosome against association...
The significance threshold is set at the top 1% of the Fst values distribution tail.</p
<p>two-tailed Z-test is applied and the significance threshold is set at–log<sub>10</sub> (two-taile...
<p>A. Genome-wide Manhattan plot obtained by across-breed single-point analysis for an index combini...
The absolute values of iHS for each SNP are plotted on the vertical axis, with red and blue lines dr...
<p>Plots over the genome of the SEN iHS (a) and ZEB/SEN (b) and EUT/CGU (c) Rsb scores for each SNP....
Genome-wide summary stats for modified iHS scan in 1KG as reported in: Patterns of shared signature...
<p>The Manhattan plot shows nominal <i>P</i>-values from association with mean corpuscular hemoglobi...
Additional file 2: Figure S1. Decay of r2 as a function of physical distance on chromosomes 11 and 1...
<p>The results of the genome-wide association analysis are shown for chromosomes 1 through 29 and th...
<p>A) Discovery data (2,657 windows) B) Combined data (2,656 windows). Y-axis represents the proport...
<p>Odds Ratio, 95% confidence interval, and p value are reported for each threshold investigated.</p
Manhattan plot showing–log10 (P-values) of association between each single nucleotide polymorphism e...
Signatures of positive selection in the genome are a characteristic mark of adaptation that can reve...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>SNPs are plotted on the x-axis according to their position on each chromosome against association...
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