Additional file 1: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Additional file 7: of Genome-scale CRISPR-Cas9 knockout screening in gastrointestinal stromal tumor with Imatinib resistance

Jie Cao (353200)
Jianchang Wei (5626712)
Ping Yang (56755)
Tong Zhang (103827)
Zhuanpeng Chen (5626715)
Feng He (47348)
Fang Wei (31236)
Huacui Chen (5626718)
He Hu (122225)
Junbin Zhong (5626721)
Zhi Yang (124104)
Wensong Cai (5626724)
Wanglin Li (5626727)
Qiang Wang (32383)

August 2018

Table S5. Detailed information of GO analysis for the selected 20 genes. (DOCX 13Â kb

Additional file 1: of GTSE1 is involved in breast cancer progression in p53 mutation-dependent manner

Fen Lin (285486)
Yu-Jie Xie (6566582)
Xin-Ke Zhang (5801429)
Tie-Jun Huang (475991)
Hong-Fa Xu (5321582)
Yan Mei (525577)
Hu Liang (1776022)
Hao Hu (111737)
Si-Ting Lin (6566585)
Fei-Fei Luo (6566588)
Yan-Hong Lang (4870198)
Li-Xia Peng (475992)
Chao-Nan Qian (248097)
Bi-Jun Huang (138662)

April 2019

Table S1: Primer sequence. Table S2: The sequences of small interfering RNA of GTSE1. Table S3: GTSE...

Additional file 1: Table S1. of A long non-coding RNA signature to improve prognosis prediction of gastric cancer

Xiaoqiang Zhu (3349874)
Xianglong Tian (3763804)
Chenyang Yu (3763801)
Chaoqin Shen (3763807)
Tingting Yan (330839)
Jie Hong (122604)
Zheng Wang (25883)
Jing-Yuan Fang (209343)
Haoyan Chen (183892)

September 2016

Clinical characteristics of 492 gastric cancer patients involved in the study. (DOCX 15Â kb

Additional file 2: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Chaoran Yu (826178)
Pei Xue (133081)
Luyang Zhang (5677079)
Ruijun Pan (4011314)
Zhenhao Cai (5677085)
Zirui He (5677088)
Jing Sun (141206)
Minhua Zheng (232421)

August 2018

Table S2. The adj. p value and log fold change (logFC) of the hub genes in TCGA and GSE77346 dataset...

Additional file 4: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Chaoran Yu (826178)
Pei Xue (133081)
Luyang Zhang (5677079)
Ruijun Pan (4011314)
Zhenhao Cai (5677085)
Zirui He (5677088)
Jing Sun (141206)
Minhua Zheng (232421)

August 2018

Figure S2. The mRNA expression of hub genes in clinical stages in TCGA. (PDF 2878 kb

Additional file 5: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Chaoran Yu (826178)
Pei Xue (133081)
Luyang Zhang (5677079)
Ruijun Pan (4011314)
Zhenhao Cai (5677085)
Zirui He (5677088)
Jing Sun (141206)
Minhua Zheng (232421)

August 2018

Table S3. Targeted drugs with corresponding GEO datasets for gastric cancer. (DOCX 18 kb

Additional file 6: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Chaoran Yu (826178)
Pei Xue (133081)
Luyang Zhang (5677079)
Ruijun Pan (4011314)
Zhenhao Cai (5677085)
Zirui He (5677088)
Jing Sun (141206)
Minhua Zheng (232421)

August 2018

Figure S3. The mRNA expression and the fold change of the hub genes. (A) the mRNA expression of hub ...

Additional file 1: of Circular RNA AKT3 upregulates PIK3R1 to enhance cisplatin resistance in gastric cancer via miR-198 suppression

Xiaoxu Huang (537292)
Zheng Li (26302)
Qiang Zhang (45005)
Weizhi Wang (124642)
Bowen Li (200859)
Lu Wang (45927)
Zhipeng Xu (198453)
Ailiang Zeng (6530567)
Xing Zhang (11943)
Xuan Zhang (56049)
Zhongyuan He (322797)
Qiang Li (8118)
Guangli Sun (544974)
Sen Wang (135167)
Qing Li (84975)
Linjun Wang (1296336)
Lu Zhang (50563)
Hao Xu (6530)
Zekuan Xu (308992)

March 2019

Table S1. Detailed information of cohort 1 and 2 is listed. Table S2. Primers and RNA sequences used...

Additional file 1: of Expression and prognostic value of cell-cycle-associated genes in gastric adenocarcinoma

Dongya Wang (5058455)
Haige Zhu (5354393)
Meng Guo (83383)
Xiaotong Fan (4006040)
Shuangshuang Hu (5354396)
Kemin Yan (4924420)
Jia Sun (761745)
Jiaojiao Wang (541548)
Miaomiao Li (483829)
Haijuan Xiao (5354399)
Zhiguo Liu (594653)

June 2018

Table S1. Gene listed in KEGG cell cycle pathway (hsa04110). Table S2. Comparison of Survival Curves...

Additional file 2: of Comparison of different functional prediction scores using a gene-based permutation model for identifying cancer driver genes

Alice Nono (6286694)
Ken Chen (61463)
Xiaoming Liu (47653)

February 2019

Table S3. Predicted breast cancer driver genes by the seven permutation models. Table S4. Predicted ...

Additional file 1: of 14–3-3ζ inhibits heme oxygenase-1 (HO-1) degradation and promotes hepatocellular carcinoma proliferation: involvement of STAT3 signaling

Jia Song (495396)
Xiaochao Zhang (6046529)
Zhibin Liao (6173411)
Huifang Liang (781781)
Liang Chu (126831)
Wei Dong (6479)
Xuewu Zhang (2310436)
Qianyun Ge (6173414)
Qiumeng Liu (6173417)
Pan Fan (6173420)
Zhanguo Zhang (3138240)
Bixiang Zhang (745204)

January 2019

Table S1. Primers for shRNA lentiviral constructs; Table S2. siRNA target sequences; Table S3. The s...

Additional file 3: Table S2. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

Frédéric Canal (3179895)
Elodie Anthony (3461654)
Aurianne Lescure (310453)
Elaine Del Nery (310455)
Jacques Camonis (49694)
Franck Perez (259284)
Bruno Ragazzon (140444)
Christine Perret (365234)

December 2015

List of the 52 genes identified among the 687 tested genes in HT screening as important for the cell...

Additional file 1: Table S1. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

Frédéric Canal (3179895)
Elodie Anthony (3461654)
Aurianne Lescure (310453)
Elaine Del Nery (310455)
Jacques Camonis (49694)
Franck Perez (259284)
Bruno Ragazzon (140444)
Christine Perret (365234)

December 2015

Affymetrix DNA microarray analysis of gene expression in HuH6shCTNNB1 cells in response to Dox treat...

Additional file 1: Table S1. of A transcriptome-based protein network that identifies new therapeutic targets in colorectal cancer

Stéphanie Durand (149800)
Killian Trillet (4480687)
Arnaud Uguen (587564)
Aude Saint-Pierre (4480696)
Catherine Le Jossic-Corcos (4480693)
Laurent Corcos (176717)

September 2017

List of genes from the five different RT² Profiler™ PCR Array Human Systems used in this study, clas...

Additional file 2: Table S1. of Prediction of response to anti-EGFR antibody-based therapies by multigene sequencing in colorectal cancer patients

Laura Lupini (3534302)
Cristian Bassi (800303)
Jitka Mlcochova (3534308)
Gentian Musa (3534296)
Marta Russo (3155706)
Petra Vychytilova-Faltejskova (3534305)
Marek Svoboda (3534311)
Silvia Sabbioni (458185)
Radim Nemecek (3534299)
Ondrej Slaby (798076)
Massimo Negrini (258440)

October 2015

Sequences and positions in the human genome of primers employed for amplification of regions of inte...

Additional file 7: of Genome-scale CRISPR-Cas9 knockout screening in gastrointestinal stromal tumor with Imatinib resistance

Jie Cao (353200)
Jianchang Wei (5626712)
Ping Yang (56755)
Tong Zhang (103827)
Zhuanpeng Chen (5626715)
Feng He (47348)
Fang Wei (31236)
Huacui Chen (5626718)
He Hu (122225)
Junbin Zhong (5626721)
Zhi Yang (124104)
Wensong Cai (5626724)
Wanglin Li (5626727)
Qiang Wang (32383)

August 2018

Table S5. Detailed information of GO analysis for the selected 20 genes. (DOCX 13Â kb

Additional file 1: of GTSE1 is involved in breast cancer progression in p53 mutation-dependent manner

Fen Lin (285486)
Yu-Jie Xie (6566582)
Xin-Ke Zhang (5801429)
Tie-Jun Huang (475991)
Hong-Fa Xu (5321582)
Yan Mei (525577)
Hu Liang (1776022)
Hao Hu (111737)
Si-Ting Lin (6566585)
Fei-Fei Luo (6566588)
Yan-Hong Lang (4870198)
Li-Xia Peng (475992)
Chao-Nan Qian (248097)
Bi-Jun Huang (138662)

April 2019

Table S1: Primer sequence. Table S2: The sequences of small interfering RNA of GTSE1. Table S3: GTSE...

Additional file 1: Table S1. of A long non-coding RNA signature to improve prognosis prediction of gastric cancer

Xiaoqiang Zhu (3349874)
Xianglong Tian (3763804)
Chenyang Yu (3763801)
Chaoqin Shen (3763807)
Tingting Yan (330839)
Jie Hong (122604)
Zheng Wang (25883)
Jing-Yuan Fang (209343)
Haoyan Chen (183892)

September 2016

Clinical characteristics of 492 gastric cancer patients involved in the study. (DOCX 15Â kb

Additional file 2: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Chaoran Yu (826178)
Pei Xue (133081)
Luyang Zhang (5677079)
Ruijun Pan (4011314)
Zhenhao Cai (5677085)
Zirui He (5677088)
Jing Sun (141206)
Minhua Zheng (232421)

August 2018

Table S2. The adj. p value and log fold change (logFC) of the hub genes in TCGA and GSE77346 dataset...

Additional file 4: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Chaoran Yu (826178)
Pei Xue (133081)
Luyang Zhang (5677079)
Ruijun Pan (4011314)
Zhenhao Cai (5677085)
Zirui He (5677088)
Jing Sun (141206)
Minhua Zheng (232421)

August 2018

Figure S2. The mRNA expression of hub genes in clinical stages in TCGA. (PDF 2878 kb

Additional file 5: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Chaoran Yu (826178)
Pei Xue (133081)
Luyang Zhang (5677079)
Ruijun Pan (4011314)
Zhenhao Cai (5677085)
Zirui He (5677088)
Jing Sun (141206)
Minhua Zheng (232421)

August 2018

Table S3. Targeted drugs with corresponding GEO datasets for gastric cancer. (DOCX 18 kb

Additional file 6: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Chaoran Yu (826178)
Pei Xue (133081)
Luyang Zhang (5677079)
Ruijun Pan (4011314)
Zhenhao Cai (5677085)
Zirui He (5677088)
Jing Sun (141206)
Minhua Zheng (232421)

August 2018

Figure S3. The mRNA expression and the fold change of the hub genes. (A) the mRNA expression of hub ...

Additional file 1: of Circular RNA AKT3 upregulates PIK3R1 to enhance cisplatin resistance in gastric cancer via miR-198 suppression

Xiaoxu Huang (537292)
Zheng Li (26302)
Qiang Zhang (45005)
Weizhi Wang (124642)
Bowen Li (200859)
Lu Wang (45927)
Zhipeng Xu (198453)
Ailiang Zeng (6530567)
Xing Zhang (11943)
Xuan Zhang (56049)
Zhongyuan He (322797)
Qiang Li (8118)
Guangli Sun (544974)
Sen Wang (135167)
Qing Li (84975)
Linjun Wang (1296336)
Lu Zhang (50563)
Hao Xu (6530)
Zekuan Xu (308992)

March 2019

Table S1. Detailed information of cohort 1 and 2 is listed. Table S2. Primers and RNA sequences used...

Additional file 1: of Expression and prognostic value of cell-cycle-associated genes in gastric adenocarcinoma

Dongya Wang (5058455)
Haige Zhu (5354393)
Meng Guo (83383)
Xiaotong Fan (4006040)
Shuangshuang Hu (5354396)
Kemin Yan (4924420)
Jia Sun (761745)
Jiaojiao Wang (541548)
Miaomiao Li (483829)
Haijuan Xiao (5354399)
Zhiguo Liu (594653)

June 2018

Table S1. Gene listed in KEGG cell cycle pathway (hsa04110). Table S2. Comparison of Survival Curves...

Additional file 2: of Comparison of different functional prediction scores using a gene-based permutation model for identifying cancer driver genes

Alice Nono (6286694)
Ken Chen (61463)
Xiaoming Liu (47653)

February 2019

Table S3. Predicted breast cancer driver genes by the seven permutation models. Table S4. Predicted ...

Additional file 1: of 14–3-3ζ inhibits heme oxygenase-1 (HO-1) degradation and promotes hepatocellular carcinoma proliferation: involvement of STAT3 signaling

Jia Song (495396)
Xiaochao Zhang (6046529)
Zhibin Liao (6173411)
Huifang Liang (781781)
Liang Chu (126831)
Wei Dong (6479)
Xuewu Zhang (2310436)
Qianyun Ge (6173414)
Qiumeng Liu (6173417)
Pan Fan (6173420)
Zhanguo Zhang (3138240)
Bixiang Zhang (745204)

January 2019

Table S1. Primers for shRNA lentiviral constructs; Table S2. siRNA target sequences; Table S3. The s...

Additional file 3: Table S2. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

Frédéric Canal (3179895)
Elodie Anthony (3461654)
Aurianne Lescure (310453)
Elaine Del Nery (310455)
Jacques Camonis (49694)
Franck Perez (259284)
Bruno Ragazzon (140444)
Christine Perret (365234)

December 2015

List of the 52 genes identified among the 687 tested genes in HT screening as important for the cell...

Additional file 1: Table S1. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

Frédéric Canal (3179895)
Elodie Anthony (3461654)
Aurianne Lescure (310453)
Elaine Del Nery (310455)
Jacques Camonis (49694)
Franck Perez (259284)
Bruno Ragazzon (140444)
Christine Perret (365234)

December 2015

Affymetrix DNA microarray analysis of gene expression in HuH6shCTNNB1 cells in response to Dox treat...

Additional file 1: Table S1. of A transcriptome-based protein network that identifies new therapeutic targets in colorectal cancer

Stéphanie Durand (149800)
Killian Trillet (4480687)
Arnaud Uguen (587564)
Aude Saint-Pierre (4480696)
Catherine Le Jossic-Corcos (4480693)
Laurent Corcos (176717)

September 2017

List of genes from the five different RT² Profiler™ PCR Array Human Systems used in this study, clas...

Additional file 2: Table S1. of Prediction of response to anti-EGFR antibody-based therapies by multigene sequencing in colorectal cancer patients

Laura Lupini (3534302)
Cristian Bassi (800303)
Jitka Mlcochova (3534308)
Gentian Musa (3534296)
Marta Russo (3155706)
Petra Vychytilova-Faltejskova (3534305)
Marek Svoboda (3534311)
Silvia Sabbioni (458185)
Radim Nemecek (3534299)
Ondrej Slaby (798076)
Massimo Negrini (258440)

October 2015

Sequences and positions in the human genome of primers employed for amplification of regions of inte...

Additional file 7: of Genome-scale CRISPR-Cas9 knockout screening in gastrointestinal stromal tumor with Imatinib resistance

Jie Cao (353200)
Jianchang Wei (5626712)
Ping Yang (56755)
Tong Zhang (103827)
Zhuanpeng Chen (5626715)
Feng He (47348)
Fang Wei (31236)
Huacui Chen (5626718)
He Hu (122225)
Junbin Zhong (5626721)
Zhi Yang (124104)
Wensong Cai (5626724)
Wanglin Li (5626727)
Qiang Wang (32383)

August 2018

Table S5. Detailed information of GO analysis for the selected 20 genes. (DOCX 13Â kb

Additional file 1: of GTSE1 is involved in breast cancer progression in p53 mutation-dependent manner

Fen Lin (285486)
Yu-Jie Xie (6566582)
Xin-Ke Zhang (5801429)
Tie-Jun Huang (475991)
Hong-Fa Xu (5321582)
Yan Mei (525577)
Hu Liang (1776022)
Hao Hu (111737)
Si-Ting Lin (6566585)
Fei-Fei Luo (6566588)
Yan-Hong Lang (4870198)
Li-Xia Peng (475992)
Chao-Nan Qian (248097)
Bi-Jun Huang (138662)

April 2019

Table S1: Primer sequence. Table S2: The sequences of small interfering RNA of GTSE1. Table S3: GTSE...

Additional file 1: Table S1. of A long non-coding RNA signature to improve prognosis prediction of gastric cancer

Xiaoqiang Zhu (3349874)
Xianglong Tian (3763804)
Chenyang Yu (3763801)
Chaoqin Shen (3763807)
Tingting Yan (330839)
Jie Hong (122604)
Zheng Wang (25883)
Jing-Yuan Fang (209343)
Haoyan Chen (183892)

September 2016

Clinical characteristics of 492 gastric cancer patients involved in the study. (DOCX 15Â kb

Additional file 1: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Abstract

Extracted data

Additional file 1: of Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer

Abstract

Extracted data

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