Table S3. A pair-wise comparison of selected genomes for (a) in silico DNA-DNA hybridization (DDH), (b) average amino acid identity (AAI), (c) δ* differences (the average difference of dinucleotide relative abundance), and (d) the percentage of conserved proteins (POCP). 1, Pontimonas salivibrio CL-TW6T; 2, Rhodoluna lacicola MWH-Ta8T; 3, Yonghaparkia sp. Root332; 4, Microcella alkaliphila JAM AC0309; 5, acMicro-4. (PDF 60 kb
Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relations...
Table S1. Genome sequences used in this study. Table S2. ABBA PTases used as query sequences. Table ...
Table S2. General features of the 13 marine bacteria complete genomes used to compare with Vibrio. (...
Table S4. Distribution of best BlastP matches, %GC, genome size, and numbers of tRNA and rRNA genes ...
Figure S3. Phylogenomic tree. Encoded protein sequences catenated were selected from among large gen...
Table S1. Additional phenotypic traits measured for P. salivibrio CL-TW6T. (DOC 35 kb
Table S2. Loci from P. salivibrio CL-TW6T grouped by pathway or functional category with vertical in...
Figure S2. Maximum likelihood tree of 16S rRNA sequences placing representative genomes within the c...
Table S9. Frequency of optimal codon index of codons calculated by codonW in P. salivibrio CL-TW6T g...
Table S8. Top ranked genes (of 764 P. salivibrio genes prescreened for vertical descent) for preferr...
Figure S1. Key metabolic pathways in P. salivibrio CL-TW6T. APS, adenosine-5′-phosphosulfate; DMAPP,...
Table S6. Number of paralogs of given protein families or presence/absence of a gene marking a parti...
Figure S4. Distribution of genes likely derived from horizontal transfer as indicated by low vertica...
Table S2. ANI (Average Nucleotide Identity, %), AAI (Average Amino acid Identity, %) and GGDH (Genom...
Enrichment culture of surface seawater contaminated with weathered oil (slicks) from the Deepwater H...
Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relations...
Table S1. Genome sequences used in this study. Table S2. ABBA PTases used as query sequences. Table ...
Table S2. General features of the 13 marine bacteria complete genomes used to compare with Vibrio. (...
Table S4. Distribution of best BlastP matches, %GC, genome size, and numbers of tRNA and rRNA genes ...
Figure S3. Phylogenomic tree. Encoded protein sequences catenated were selected from among large gen...
Table S1. Additional phenotypic traits measured for P. salivibrio CL-TW6T. (DOC 35 kb
Table S2. Loci from P. salivibrio CL-TW6T grouped by pathway or functional category with vertical in...
Figure S2. Maximum likelihood tree of 16S rRNA sequences placing representative genomes within the c...
Table S9. Frequency of optimal codon index of codons calculated by codonW in P. salivibrio CL-TW6T g...
Table S8. Top ranked genes (of 764 P. salivibrio genes prescreened for vertical descent) for preferr...
Figure S1. Key metabolic pathways in P. salivibrio CL-TW6T. APS, adenosine-5′-phosphosulfate; DMAPP,...
Table S6. Number of paralogs of given protein families or presence/absence of a gene marking a parti...
Figure S4. Distribution of genes likely derived from horizontal transfer as indicated by low vertica...
Table S2. ANI (Average Nucleotide Identity, %), AAI (Average Amino acid Identity, %) and GGDH (Genom...
Enrichment culture of surface seawater contaminated with weathered oil (slicks) from the Deepwater H...
Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relations...
Table S1. Genome sequences used in this study. Table S2. ABBA PTases used as query sequences. Table ...
Table S2. General features of the 13 marine bacteria complete genomes used to compare with Vibrio. (...