Additional file 1: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Additional file 11: of In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians

Alyssa Molinaro (3428537)
Bret Pearson (3428540)

April 2016

A table of raw read counts obtained for all 168 single cell samples aligned to the SmedASXL planaria...

Transcriptome Analysis Reveals Strain-Specific and Conserved Stemness Genes in Schmidtea mediterranea

Alissa M. Resch
Michael Horowitz
Brenton R. Graveley
Alissa M. Horowitz
Brenton R
Transcriptome Analysis Reveals Strain-specific
Alissa M. Resch
Dasaradhi Palakodeti
Yi-chien Lu
Michael Horowitz
Brenton R. Graveley

January 2012

The planarian Schmidtea mediterranea is a powerful model organism for studying stem cell biology due...

Digital Gene Expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea

Rodríguez Esteban, Gustavo
González-Sastre, Alejandro
Rojo-Laguna, José Ignacio
Saló i Boix, Emili
Abril Ferrando, Josep Francesc, 1970-

The freshwater planarian Schmidtea mediterranea is recognised as a valuable model for research into ...

Additional file 4: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Distribution of predicted transcription factors in clusters. Three tables indicating distribution of...

Additional file 7: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Comparison of cluster markers identified in this study with results of Wurtzel et al. [26]. Table co...

Additional file 6: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Distribution of significantly upregulated/downregulated enzymes in the clusters. Table indicating pa...

Additional file 5: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Heatmap of all Gene Ontology (GO) terms. Table showing distribution of various GO categories across ...

Additional file 2: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Figure S1. Comparative analysis of the mapped and unmapped transcripts of Toronto and PlanMine trans...

Supplemental Tables for Comprehensive single-cell transcriptional profiling of the regenerative planarian Schmidtea mediterranea

Fincher, Christopher T.
Wurtzel, Omri
de Hoog, Thom
Kravarik, Kellie Marie
Reddien, Peter

January 2020

Five supplementary tables associated with chapter 2 of the thesis titled Comprehensive single-cell t...

Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Swapna, Lakshmipuram S
Molinaro, Alyssa M
Lindsay-Mosher, Nicole
Pearson, Bret J
Parkinson, John

October 2018

Abstract Background In the Lophotrochozoa/Spiralia su...

A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology.

Martin J Blythe
Damian Kao
Sunir Malla
Joanna Rowsell
Ray Wilson
Deborah Evans
Jamie Jowett
Amy Hall
Virginie Lemay
Sabrina Lam
A Aziz Aboobaker

December 2010

The use of planarians as a model system is expanding and the mechanisms that control planarian regen...

Aboobaker Lab Schmidtea mediterranea transcriptome dataset

Damian Kao (100593)

October 2013

<p>This fileset contains data associated with the consolidated Schmidtea mediterranea transcriptome....

Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

Abril Ferrando, Josep Francesc, 1970-
Cebrià Sánchez, Francesc
Rodríguez-Esteban, Gustavo
Horn, Thomas
Fraguas, Susanna
Calvo, Beatriz
Bartscherer, Kerstin
Saló i Boix, Emili

March 2012

Background Freshwater planarians are an attractive model for regeneration and stem cell research and...

Smed454 dataset: unravelling the transcriptome of <it>Schmidtea mediterranea</it>

Fraguas Susanna
Horn Thomas
Rodríguez-Esteban Gustavo
Cebrià Francesc
Abril Josep F
Calvo Beatriz
Bartscherer Kerstin
Saló Emili

December 2010

Abstract Background Freshwater planarians are an attractive model for regeneration and stem cell res...

De novo assembly and vailidation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

Adamidi, C.
Wang, Y.
Grün, D.
Mastrobuoni, G.
You, X.
Tolle, D.
Dodt, M.
Mackowiak, S.
Gogol-Doering, A.
Oenal, P.
Rybak, A.
Ross, E.
Alvarado, A.
Kempa, S.
Dieterich, C.
Rajewsky, N.
Chen, W.

January 2011

Freshwater planaria are a very attractive model system for stem cell biology, tissue homeostasis, an...

Additional file 11: of In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians

Alyssa Molinaro (3428537)
Bret Pearson (3428540)

April 2016

A table of raw read counts obtained for all 168 single cell samples aligned to the SmedASXL planaria...

Transcriptome Analysis Reveals Strain-Specific and Conserved Stemness Genes in Schmidtea mediterranea

Alissa M. Resch
Michael Horowitz
Brenton R. Graveley
Alissa M. Horowitz
Brenton R
Transcriptome Analysis Reveals Strain-specific
Alissa M. Resch
Dasaradhi Palakodeti
Yi-chien Lu
Michael Horowitz
Brenton R. Graveley

January 2012

The planarian Schmidtea mediterranea is a powerful model organism for studying stem cell biology due...

Digital Gene Expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea

Rodríguez Esteban, Gustavo
González-Sastre, Alejandro
Rojo-Laguna, José Ignacio
Saló i Boix, Emili
Abril Ferrando, Josep Francesc, 1970-

The freshwater planarian Schmidtea mediterranea is recognised as a valuable model for research into ...

Additional file 4: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Distribution of predicted transcription factors in clusters. Three tables indicating distribution of...

Additional file 7: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Comparison of cluster markers identified in this study with results of Wurtzel et al. [26]. Table co...

Additional file 6: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Distribution of significantly upregulated/downregulated enzymes in the clusters. Table indicating pa...

Additional file 5: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Heatmap of all Gene Ontology (GO) terms. Table showing distribution of various GO categories across ...

Additional file 2: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Lakshmipuram Swapna (5684930)
Alyssa Molinaro (3428537)
Nicole Lindsay-Mosher (5684933)
Bret Pearson (3428540)
John Parkinson (4087)

August 2018

Figure S1. Comparative analysis of the mapped and unmapped transcripts of Toronto and PlanMine trans...

Supplemental Tables for Comprehensive single-cell transcriptional profiling of the regenerative planarian Schmidtea mediterranea

Fincher, Christopher T.
Wurtzel, Omri
de Hoog, Thom
Kravarik, Kellie Marie
Reddien, Peter

January 2020

Five supplementary tables associated with chapter 2 of the thesis titled Comprehensive single-cell t...

Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Swapna, Lakshmipuram S
Molinaro, Alyssa M
Lindsay-Mosher, Nicole
Pearson, Bret J
Parkinson, John

October 2018

Abstract Background In the Lophotrochozoa/Spiralia su...

A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology.

Martin J Blythe
Damian Kao
Sunir Malla
Joanna Rowsell
Ray Wilson
Deborah Evans
Jamie Jowett
Amy Hall
Virginie Lemay
Sabrina Lam
A Aziz Aboobaker

December 2010

The use of planarians as a model system is expanding and the mechanisms that control planarian regen...

Aboobaker Lab Schmidtea mediterranea transcriptome dataset

Damian Kao (100593)

October 2013

<p>This fileset contains data associated with the consolidated Schmidtea mediterranea transcriptome....

Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

Abril Ferrando, Josep Francesc, 1970-
Cebrià Sánchez, Francesc
Rodríguez-Esteban, Gustavo
Horn, Thomas
Fraguas, Susanna
Calvo, Beatriz
Bartscherer, Kerstin
Saló i Boix, Emili

March 2012

Background Freshwater planarians are an attractive model for regeneration and stem cell research and...

Smed454 dataset: unravelling the transcriptome of <it>Schmidtea mediterranea</it>

Fraguas Susanna
Horn Thomas
Rodríguez-Esteban Gustavo
Cebrià Francesc
Abril Josep F
Calvo Beatriz
Bartscherer Kerstin
Saló Emili

December 2010

Abstract Background Freshwater planarians are an attractive model for regeneration and stem cell res...

De novo assembly and vailidation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

Adamidi, C.
Wang, Y.
Grün, D.
Mastrobuoni, G.
You, X.
Tolle, D.
Dodt, M.
Mackowiak, S.
Gogol-Doering, A.
Oenal, P.
Rybak, A.
Ross, E.
Alvarado, A.
Kempa, S.
Dieterich, C.
Rajewsky, N.
Chen, W.

January 2011

Freshwater planaria are a very attractive model system for stem cell biology, tissue homeostasis, an...

Additional file 11: of In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians

Alyssa Molinaro (3428537)
Bret Pearson (3428540)

April 2016

A table of raw read counts obtained for all 168 single cell samples aligned to the SmedASXL planaria...

Transcriptome Analysis Reveals Strain-Specific and Conserved Stemness Genes in Schmidtea mediterranea

Alissa M. Resch
Michael Horowitz
Brenton R. Graveley
Alissa M. Horowitz
Brenton R
Transcriptome Analysis Reveals Strain-specific
Alissa M. Resch
Dasaradhi Palakodeti
Yi-chien Lu
Michael Horowitz
Brenton R. Graveley

January 2012

The planarian Schmidtea mediterranea is a powerful model organism for studying stem cell biology due...

Digital Gene Expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea

Rodríguez Esteban, Gustavo
González-Sastre, Alejandro
Rojo-Laguna, José Ignacio
Saló i Boix, Emili
Abril Ferrando, Josep Francesc, 1970-

The freshwater planarian Schmidtea mediterranea is recognised as a valuable model for research into ...

Additional file 1: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Abstract

Extracted data

Additional file 1: of Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Abstract

Extracted data

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