Additional file 1: of Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection

Table S1. Primer sequences used in this study. Table S2. Bile acids identified by UPLC-MS analysis. Table S3. Bile acid profile of fresh donor samples vs frozen donor. Table S4. Fatty acids identified by UPLC-MS analysis. Table S5. R Libraries and the Versions. Figure S1. The relative abundance of many bacterial genera is restored to donor levels after FMT. Figure S2. Composition of the 4 Co-abundance groups in Fig. 2, A: Classification at genus level. B: Classification at phylum level. Figure S3. The relative abundance of Co-abundance Groups across all samples. Figure S4. Faecal bile acid levels in all the samples. Figure S5. PCoA of the microbiota based on the weighted UniFrac distance. Figure S6. Heatmap based on metagenomic shotgun sequencing. (DOCX 428 kb