Additional file 3: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Additional file 3: of Transketolase (TKT) activity and nuclear localization promote hepatocellular carcinoma in a metabolic and a non-metabolic manner

Zhaoyu Qin (3369227)
Chan Xiang (6578510)
Fan Zhong (178390)
Yang Liu (4829)
Qiongzhu Dong (5156150)
Kai Li (205203)
Wenhao Shi (3369218)
Chen Ding (123510)
Lunxiu Qin (624841)
Fuchu He (43571)

April 2019

Figure S1. The expression levels of TKTL1 and TKTL2 in HCC tissues and stable cell lines. A. TKT, TK...

Additional file 1: of Enrichment of cancer stem cells via Î˛-catenin contributing to the tumorigenesis of hepatocellular carcinoma

Harshul Pandit (5483201)
Yan Li (23143)
Xuanyi Li (1393540)
Weizhong Zhang (170125)
Suping Li (1396921)
Robert Martin (4067452)

August 2018

Supplementary experiments and routine methods. Figure S1. Spheroid formation capability of HCC cell ...

Additional file 1: of Cx32 exerts anti-apoptotic and pro-tumor effects via the epidermal growth factor receptor pathway in hepatocellular carcinoma

Yuke Xiang (6557186)
Qin Wang (109812)
Yunquan Guo (6557189)
Hui Ge (42549)
Yile Fu (6557195)
Xiyan Wang (457117)
Liang Tao (248968)

April 2019

Figure S1. The expression and distribution of Cx32 in HCC cell lines. Figure S2. The GJ function in ...

Additional file 1: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika PioroĹska (5711921)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan WĂślfl (5711924)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Methods and Figures. Figure S1. Phenotypic and molecular characteristics of HCC cell lines. Figure S...

Additional file 4: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika PioroĹska (5711921)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan WĂślfl (5711924)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Table S3. Top pathway enrichment and the specific genes involved. Enrichment analysis was performed ...

Additional file 5: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika Piorońska (5711915)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan Wölfl (3599720)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Table S4. Consistent genes in all four human HCC datasets analysed in this study. These are the gene...

Additional file 8: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika Piorońska (5711915)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan Wölfl (3599720)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Table S7. Human HCC tissue-derived metabolic genes (HMGs) mimicked by HLE or HUH7 cells upon compari...

Additional file 6: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika PioroĹska (5711921)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan WĂślfl (5711924)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Table S5. Complete list of downregulated HMGs concordantly low in the p.d. cells (part of Fig. 2c). ...

Additional file 1: of Functional role of SGK3 in PI3K/Pten driven liver tumor development

Hui Cao (182176)
Zhong Xu (341851)
Jingxiao Wang (4543588)
Antonio Cigliano (4416913)
Maria Pilo (2108128)
Silvia Ribback (5473766)
Shu Zhang (22238)
Yu Qiao (462684)
Li Che (5473772)
Rosa Pascale (6581798)
Diego Calvisi (6581801)
Xin Chen (14149)

April 2019

Table S1: Western blotting (WB) and Immunohistochemistry (IHC) antibody information. Table S2: Cell ...

Additional file 1: Table S1. of Microarray-based identification of genes associated with cancer progression and prognosis in hepatocellular carcinoma

Fuqiang Yin (703472)
Lipei Shu (3534785)
Xia Liu (117318)
Ting Li (117885)
Tao Peng (81319)
Yueli Nan (3534782)
Shu Li (136154)
Xiaoyun Zeng (698516)
Xiaoqiang Qiu (698519)

August 2016

Biological process and cellular component annotation of the 80 genes associated with HCC development...

Additional file 3: Figure S1. of Establishment of monoclonal HCC cell lines with organ site-specific tropisms

Jinliang Wan (3493808)
Duo Wen (3493814)
Lili Dong (597060)
Jun Tang (32983)
Dongli Liu (2580382)
Yang Liu (4829)
Zhonghua Tao (3493811)
Dongmei Gao (283329)
Huichuan Sun (818191)
Ya Cao (180053)
Jia Fan (178422)
Weizhong Wu (22611)

October 2015

Thirty candidate genes whose expression levels were analyzed by real-time PCR and 21 genes were succ...

Additional file 2: of Integrative analysis of DNA methylation and gene expression reveals hepatocellular carcinoma-specific diagnostic biomarkers

Jinming Cheng (5319761)
Dongkai Wei (5319758)
Yuan Ji (5702)
Lingli Chen (1647517)
Liguang Yang (5319764)
Guang Li (109360)
Leilei Wu (2363809)
Ting Hou (525066)
Lu Xie (55571)
Guohui Ding (40515)
Hong Li (20183)
Yixue Li (18673)

May 2018

Figure S1. Promoter methylation of four genes. Figure S2 Stage-related methylation of six HCC-specif...

Additional file 1: Table S1. of Mesenchymal stem cells enhance the metastasis of 3D-cultured hepatocellular carcinoma cells

Chang Liu (35901)
Yang Liu (4829)
Xiao-xi Xu (3424295)
Xin Guo (123593)
Guang-wei Sun (3424298)
Xiao-jun Ma (3424301)

July 2016

Primer pairs used for quantitative real-time PCR studies, including primer sequence, gene ID, and pr...

Additional file 3: of Integrative analysis of DNA methylation and gene expression reveals hepatocellular carcinoma-specific diagnostic biomarkers

Jinming Cheng (5319761)
Dongkai Wei (5319758)
Yuan Ji (5702)
Lingli Chen (1647517)
Liguang Yang (5319764)
Guang Li (109360)
Leilei Wu (2363809)
Ting Hou (525066)
Lu Xie (55571)
Guohui Ding (40515)
Hong Li (20183)
Yixue Li (18673)

May 2018

Prediction performance of specific CpGs in distinguishing HCC from normal tissue and other tumors. (...

Additional file 3: Table S2. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

Frédéric Canal (3179895)
Elodie Anthony (3461654)
Aurianne Lescure (310453)
Elaine Del Nery (310455)
Jacques Camonis (49694)
Franck Perez (259284)
Bruno Ragazzon (140444)
Christine Perret (365234)

December 2015

List of the 52 genes identified among the 687 tested genes in HT screening as important for the cell...

Additional file 3: of Transketolase (TKT) activity and nuclear localization promote hepatocellular carcinoma in a metabolic and a non-metabolic manner

Zhaoyu Qin (3369227)
Chan Xiang (6578510)
Fan Zhong (178390)
Yang Liu (4829)
Qiongzhu Dong (5156150)
Kai Li (205203)
Wenhao Shi (3369218)
Chen Ding (123510)
Lunxiu Qin (624841)
Fuchu He (43571)

April 2019

Figure S1. The expression levels of TKTL1 and TKTL2 in HCC tissues and stable cell lines. A. TKT, TK...

Additional file 1: of Enrichment of cancer stem cells via Î˛-catenin contributing to the tumorigenesis of hepatocellular carcinoma

Harshul Pandit (5483201)
Yan Li (23143)
Xuanyi Li (1393540)
Weizhong Zhang (170125)
Suping Li (1396921)
Robert Martin (4067452)

August 2018

Supplementary experiments and routine methods. Figure S1. Spheroid formation capability of HCC cell ...

Additional file 1: of Cx32 exerts anti-apoptotic and pro-tumor effects via the epidermal growth factor receptor pathway in hepatocellular carcinoma

Yuke Xiang (6557186)
Qin Wang (109812)
Yunquan Guo (6557189)
Hui Ge (42549)
Yile Fu (6557195)
Xiyan Wang (457117)
Liang Tao (248968)

April 2019

Figure S1. The expression and distribution of Cx32 in HCC cell lines. Figure S2. The GJ function in ...

Additional file 1: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika PioroĹska (5711921)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan WĂślfl (5711924)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Methods and Figures. Figure S1. Phenotypic and molecular characteristics of HCC cell lines. Figure S...

Additional file 4: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika PioroĹska (5711921)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan WĂślfl (5711924)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Table S3. Top pathway enrichment and the specific genes involved. Enrichment analysis was performed ...

Additional file 5: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika Piorońska (5711915)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan Wölfl (3599720)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Table S4. Consistent genes in all four human HCC datasets analysed in this study. These are the gene...

Additional file 8: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika Piorońska (5711915)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan Wölfl (3599720)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Table S7. Human HCC tissue-derived metabolic genes (HMGs) mimicked by HLE or HUH7 cells upon compari...

Additional file 6: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Zeribe Nwosu (5711912)
Nadia Battello (3551528)
Melanie Rothley (3179106)
Weronika PioroĹska (5711921)
Barbara Sitek (522367)
Matthias Ebert (170342)
Ute Hofmann (204608)
Jonathan Sleeman (144047)
Stefan WĂślfl (5711924)
Christoph Meyer (1428763)
Dominik Megger (5711918)
Steven Dooley (194854)

September 2018

Table S5. Complete list of downregulated HMGs concordantly low in the p.d. cells (part of Fig. 2c). ...

Additional file 1: of Functional role of SGK3 in PI3K/Pten driven liver tumor development

Hui Cao (182176)
Zhong Xu (341851)
Jingxiao Wang (4543588)
Antonio Cigliano (4416913)
Maria Pilo (2108128)
Silvia Ribback (5473766)
Shu Zhang (22238)
Yu Qiao (462684)
Li Che (5473772)
Rosa Pascale (6581798)
Diego Calvisi (6581801)
Xin Chen (14149)

April 2019

Table S1: Western blotting (WB) and Immunohistochemistry (IHC) antibody information. Table S2: Cell ...

Additional file 1: Table S1. of Microarray-based identification of genes associated with cancer progression and prognosis in hepatocellular carcinoma

Fuqiang Yin (703472)
Lipei Shu (3534785)
Xia Liu (117318)
Ting Li (117885)
Tao Peng (81319)
Yueli Nan (3534782)
Shu Li (136154)
Xiaoyun Zeng (698516)
Xiaoqiang Qiu (698519)

August 2016

Biological process and cellular component annotation of the 80 genes associated with HCC development...

Additional file 3: Figure S1. of Establishment of monoclonal HCC cell lines with organ site-specific tropisms

Jinliang Wan (3493808)
Duo Wen (3493814)
Lili Dong (597060)
Jun Tang (32983)
Dongli Liu (2580382)
Yang Liu (4829)
Zhonghua Tao (3493811)
Dongmei Gao (283329)
Huichuan Sun (818191)
Ya Cao (180053)
Jia Fan (178422)
Weizhong Wu (22611)

October 2015

Thirty candidate genes whose expression levels were analyzed by real-time PCR and 21 genes were succ...

Additional file 2: of Integrative analysis of DNA methylation and gene expression reveals hepatocellular carcinoma-specific diagnostic biomarkers

Jinming Cheng (5319761)
Dongkai Wei (5319758)
Yuan Ji (5702)
Lingli Chen (1647517)
Liguang Yang (5319764)
Guang Li (109360)
Leilei Wu (2363809)
Ting Hou (525066)
Lu Xie (55571)
Guohui Ding (40515)
Hong Li (20183)
Yixue Li (18673)

May 2018

Figure S1. Promoter methylation of four genes. Figure S2 Stage-related methylation of six HCC-specif...

Additional file 1: Table S1. of Mesenchymal stem cells enhance the metastasis of 3D-cultured hepatocellular carcinoma cells

Chang Liu (35901)
Yang Liu (4829)
Xiao-xi Xu (3424295)
Xin Guo (123593)
Guang-wei Sun (3424298)
Xiao-jun Ma (3424301)

July 2016

Primer pairs used for quantitative real-time PCR studies, including primer sequence, gene ID, and pr...

Additional file 3: of Integrative analysis of DNA methylation and gene expression reveals hepatocellular carcinoma-specific diagnostic biomarkers

Jinming Cheng (5319761)
Dongkai Wei (5319758)
Yuan Ji (5702)
Lingli Chen (1647517)
Liguang Yang (5319764)
Guang Li (109360)
Leilei Wu (2363809)
Ting Hou (525066)
Lu Xie (55571)
Guohui Ding (40515)
Hong Li (20183)
Yixue Li (18673)

May 2018

Prediction performance of specific CpGs in distinguishing HCC from normal tissue and other tumors. (...

Additional file 3: Table S2. of A kinome siRNA screen identifies HGS as a potential target for liver cancers with oncogenic mutations in CTNNB1

Frédéric Canal (3179895)
Elodie Anthony (3461654)
Aurianne Lescure (310453)
Elaine Del Nery (310455)
Jacques Camonis (49694)
Franck Perez (259284)
Bruno Ragazzon (140444)
Christine Perret (365234)

December 2015

List of the 52 genes identified among the 687 tested genes in HT screening as important for the cell...

Additional file 3: of Transketolase (TKT) activity and nuclear localization promote hepatocellular carcinoma in a metabolic and a non-metabolic manner

Zhaoyu Qin (3369227)
Chan Xiang (6578510)
Fan Zhong (178390)
Yang Liu (4829)
Qiongzhu Dong (5156150)
Kai Li (205203)
Wenhao Shi (3369218)
Chen Ding (123510)
Lunxiu Qin (624841)
Fuchu He (43571)

April 2019

Figure S1. The expression levels of TKTL1 and TKTL2 in HCC tissues and stable cell lines. A. TKT, TK...

Additional file 1: of Enrichment of cancer stem cells via Î˛-catenin contributing to the tumorigenesis of hepatocellular carcinoma

Harshul Pandit (5483201)
Yan Li (23143)
Xuanyi Li (1393540)
Weizhong Zhang (170125)
Suping Li (1396921)
Robert Martin (4067452)

August 2018

Supplementary experiments and routine methods. Figure S1. Spheroid formation capability of HCC cell ...

Additional file 1: of Cx32 exerts anti-apoptotic and pro-tumor effects via the epidermal growth factor receptor pathway in hepatocellular carcinoma

Yuke Xiang (6557186)
Qin Wang (109812)
Yunquan Guo (6557189)
Hui Ge (42549)
Yile Fu (6557195)
Xiyan Wang (457117)
Liang Tao (248968)

April 2019

Figure S1. The expression and distribution of Cx32 in HCC cell lines. Figure S2. The GJ function in ...

Additional file 3: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Abstract

Extracted data

Additional file 3: of Liver cancer cell lines distinctly mimic the metabolic gene expression pattern of the corresponding human tumours

Abstract

Extracted data

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