Additional file 8: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Additional file 1 of Phylogenomic analysis and development of molecular markers for the determination of twelve plum cultivars (Prunus, Rosaceae)

Yicen Xu (9290163)
Bo Fang (169627)
Jingling Li (729067)
Yuanwei Wang (3219036)
Jingting Liu (2527606)
Chang Liu (35901)
Jie Yu (150626)

November 2022

Additional file 1: TableS1. Summary of sequencing data quality. Table S2. Gene composition in the pl...

Additional file 8: Data S3. of SEP-class genes in Prunus mume and their likely role in floral organ development

Yuzhen Zhou (2510029)
Zongda Xu (395890)
Xue Yong (1698631)
Sagheer Ahmad (3638521)
Weiru Yang (395886)
Tangren Cheng (395888)
Jia Wang (51945)
Qixiang Zhang (395887)

January 2017

The GeneBank accession numbers of genes used in constructing phylogenetic tree. (DOCX 13Â kb

A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication

Pinosio S.
Marroni F.
Zuccolo A.
Vitulo N.
Mariette S.
Sonnante G.
Aravanopoulos F. A.
Ganopoulos I.
Palasciano M.
Vidotto M.
Magris G.
Iezzoni A.
Vendramin G. G.
Morgante M.

January 2020

Sweet cherry (Prunus avium L.) trees are both economically important fruit crops but also important ...

Additional file 5: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S4. Summary of repetitive sequences identified in the draft genome of wild P. yedoensis. (XLSX...

Additional file 10: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S9. Over- or under-represented gene families in the wild P. yedoensis genome compared to the P...

Additional file 3: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S2. Statistics of transcriptome sequence data of wild P. yedoensis (Pyn-Jeju2) used in this st...

Additional file 6: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S5. Statistics of gene models predicted from the draft genome of wild P. yedoensis. (XLSX 10 k...

Additional file 2: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S1. Statistics of genome sequence data of wild P. yedoensis (Pyn-Jeju2) used in this study. (X...

Additional file 4: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S3. Evaluation of gene space coverage of the wild P. yedoensis genome using transcriptome unig...

Additional file 11: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S10. Summary of accessions and Illumina short-read data used in whole-genome resequencing anal...

Additional file 12: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S11. Comparison of the chloroplast genomes between Prunus accessions. (XLSX 10 kb

Additional file 9: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S8. Coverage of individual chromosomes of peach (Pp), sweet cherry (Pa), and Chinese plum (Pm)...

Additional file 1: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Figure S1. K-mer plots of wild P. yedoensis (Pyn) and âYoshino cherryâ (Pxy) accessions. Figure ...

Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek
Kyung Choi
Goon-Bo Kim
Hee-Ju Yu
Ara Cho
Hoyeol Jang
Changkyun Kim
Hyuk-Jin Kim
Kae Sun Chang
Joo-Hwan Kim
Jeong-Hwan Mun

September 2018

Abstract Background Hybridization is an important evolutionary process that results in increased pla...

Additional file 2: of Genome-wide discovery and characterization of flower development related long non-coding RNAs in Prunus mume

Xinxin Wu (1672492)
Ting Shi (3955)
Shahid Iqbal (5632475)
Yong Zhang (5893)
Lin Liu (74495)
Zhihong Gao (127975)

February 2019

The unique reads mapped to various chromosomes (a, b) and the biological replicates correlation coef...

Additional file 1 of Phylogenomic analysis and development of molecular markers for the determination of twelve plum cultivars (Prunus, Rosaceae)

Yicen Xu (9290163)
Bo Fang (169627)
Jingling Li (729067)
Yuanwei Wang (3219036)
Jingting Liu (2527606)
Chang Liu (35901)
Jie Yu (150626)

November 2022

Additional file 1: TableS1. Summary of sequencing data quality. Table S2. Gene composition in the pl...

Additional file 8: Data S3. of SEP-class genes in Prunus mume and their likely role in floral organ development

Yuzhen Zhou (2510029)
Zongda Xu (395890)
Xue Yong (1698631)
Sagheer Ahmad (3638521)
Weiru Yang (395886)
Tangren Cheng (395888)
Jia Wang (51945)
Qixiang Zhang (395887)

January 2017

The GeneBank accession numbers of genes used in constructing phylogenetic tree. (DOCX 13Â kb

A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication

Pinosio S.
Marroni F.
Zuccolo A.
Vitulo N.
Mariette S.
Sonnante G.
Aravanopoulos F. A.
Ganopoulos I.
Palasciano M.
Vidotto M.
Magris G.
Iezzoni A.
Vendramin G. G.
Morgante M.

January 2020

Sweet cherry (Prunus avium L.) trees are both economically important fruit crops but also important ...

Additional file 5: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S4. Summary of repetitive sequences identified in the draft genome of wild P. yedoensis. (XLSX...

Additional file 10: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S9. Over- or under-represented gene families in the wild P. yedoensis genome compared to the P...

Additional file 3: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S2. Statistics of transcriptome sequence data of wild P. yedoensis (Pyn-Jeju2) used in this st...

Additional file 6: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S5. Statistics of gene models predicted from the draft genome of wild P. yedoensis. (XLSX 10 k...

Additional file 2: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S1. Statistics of genome sequence data of wild P. yedoensis (Pyn-Jeju2) used in this study. (X...

Additional file 4: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S3. Evaluation of gene space coverage of the wild P. yedoensis genome using transcriptome unig...

Additional file 11: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S10. Summary of accessions and Illumina short-read data used in whole-genome resequencing anal...

Additional file 12: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S11. Comparison of the chloroplast genomes between Prunus accessions. (XLSX 10 kb

Additional file 9: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Table S8. Coverage of individual chromosomes of peach (Pp), sweet cherry (Pa), and Chinese plum (Pm)...

Additional file 1: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek (50214)
Kyung Choi (5618495)
Goon-Bo Kim (5718761)
Hee-Ju Yu (553525)
Ara Cho (1736176)
Hoyeol Jang (5718767)
Changkyun Kim (689778)
Hyuk-Jin Kim (5718779)
Kae Chang (5718782)
Joo-Hwan Kim (390936)
Jeong-Hwan Mun (50209)

September 2018

Figure S1. K-mer plots of wild P. yedoensis (Pyn) and âYoshino cherryâ (Pxy) accessions. Figure ...

Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Seunghoon Baek
Kyung Choi
Goon-Bo Kim
Hee-Ju Yu
Ara Cho
Hoyeol Jang
Changkyun Kim
Hyuk-Jin Kim
Kae Sun Chang
Joo-Hwan Kim
Jeong-Hwan Mun

September 2018

Abstract Background Hybridization is an important evolutionary process that results in increased pla...

Additional file 2: of Genome-wide discovery and characterization of flower development related long non-coding RNAs in Prunus mume

Xinxin Wu (1672492)
Ting Shi (3955)
Shahid Iqbal (5632475)
Yong Zhang (5893)
Lin Liu (74495)
Zhihong Gao (127975)

February 2019

The unique reads mapped to various chromosomes (a, b) and the biological replicates correlation coef...

Additional file 1 of Phylogenomic analysis and development of molecular markers for the determination of twelve plum cultivars (Prunus, Rosaceae)

Yicen Xu (9290163)
Bo Fang (169627)
Jingling Li (729067)
Yuanwei Wang (3219036)
Jingting Liu (2527606)
Chang Liu (35901)
Jie Yu (150626)

November 2022

Additional file 1: TableS1. Summary of sequencing data quality. Table S2. Gene composition in the pl...

Additional file 8: Data S3. of SEP-class genes in Prunus mume and their likely role in floral organ development

Yuzhen Zhou (2510029)
Zongda Xu (395890)
Xue Yong (1698631)
Sagheer Ahmad (3638521)
Weiru Yang (395886)
Tangren Cheng (395888)
Jia Wang (51945)
Qixiang Zhang (395887)

January 2017

The GeneBank accession numbers of genes used in constructing phylogenetic tree. (DOCX 13Â kb

A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication

Pinosio S.
Marroni F.
Zuccolo A.
Vitulo N.
Mariette S.
Sonnante G.
Aravanopoulos F. A.
Ganopoulos I.
Palasciano M.
Vidotto M.
Magris G.
Iezzoni A.
Vendramin G. G.
Morgante M.

January 2020

Sweet cherry (Prunus avium L.) trees are both economically important fruit crops but also important ...

Additional file 8: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Abstract

Extracted data

Additional file 8: of Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries

Abstract

Extracted data

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