Additional file 10: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Additional file 20: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S20. Analysis of the signaling pathways associated with DEGs in the condition of the tMCAO mod...

Additional file 13: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S13. The RNA-Seq analysis of DEGs associated with the functional category âNeurogenesisâ. ...

Additional file 2: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S2. DEGs that exhibited a reversed direction of expression in IR4.5 vs. SH4.5 and IR24 vs. SH2...

Additional file 16: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S16. The RNA-Seq analysis of DEGs associated with the functional category âStress responseâ...

Additional file 5: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S5. The RNA-Seq analysis of DEGs associated with the functional category âAdaptive immunityâ...

Additional file 17: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S17. The RNA-Seq analysis of DEGs associated with the functional category âSynapseâ. (XLSX...

Additional file 8: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S8. The RNA-Seq analysis of DEGs associated with the functional category âDifferentiationâ...

Additional file 6: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S6. The RNA-Seq analysis of DEGs associated with the functional category âApoptosisâ. (XLS...

Additional file 18: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S18. The RNA-Seq analysis of DEGs associated with the functional category âTranscription reg...

Additional file 7: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S7. The RNA-Seq analysis of DEGs associated with the functional category âCell adhesionâ. ...

Additional file 12: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S12. The RNA-Seq analysis of DEGs associated with the functional category âIon channelâ. (...

Additional file 19: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S19. The RNA-Seq analysis of DEGs associated with the functional category âTranslation regul...

Additional file 3: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Figure S1. RNA-Seq analysis of differentially expressed genes (DEGs) in tMCAO model conditions. (PPT...

Additional file 4: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S4. Analysis of the functional categories of the proteins encoded by DEGs. (XLSX 21Â kb

Additional file 15: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S15. The RNA-Seq analysis of DEGs associated with the functional category âRibosomal protein...

Additional file 20: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S20. Analysis of the signaling pathways associated with DEGs in the condition of the tMCAO mod...

Additional file 13: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S13. The RNA-Seq analysis of DEGs associated with the functional category âNeurogenesisâ. ...

Additional file 2: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S2. DEGs that exhibited a reversed direction of expression in IR4.5 vs. SH4.5 and IR24 vs. SH2...

Additional file 16: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S16. The RNA-Seq analysis of DEGs associated with the functional category âStress responseâ...

Additional file 5: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S5. The RNA-Seq analysis of DEGs associated with the functional category âAdaptive immunityâ...

Additional file 17: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S17. The RNA-Seq analysis of DEGs associated with the functional category âSynapseâ. (XLSX...

Additional file 8: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S8. The RNA-Seq analysis of DEGs associated with the functional category âDifferentiationâ...

Additional file 6: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S6. The RNA-Seq analysis of DEGs associated with the functional category âApoptosisâ. (XLS...

Additional file 18: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S18. The RNA-Seq analysis of DEGs associated with the functional category âTranscription reg...

Additional file 7: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S7. The RNA-Seq analysis of DEGs associated with the functional category âCell adhesionâ. ...

Additional file 12: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S12. The RNA-Seq analysis of DEGs associated with the functional category âIon channelâ. (...

Additional file 19: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S19. The RNA-Seq analysis of DEGs associated with the functional category âTranslation regul...

Additional file 3: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Figure S1. RNA-Seq analysis of differentially expressed genes (DEGs) in tMCAO model conditions. (PPT...

Additional file 4: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S4. Analysis of the functional categories of the proteins encoded by DEGs. (XLSX 21Â kb

Additional file 15: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S15. The RNA-Seq analysis of DEGs associated with the functional category âRibosomal protein...

Additional file 20: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S20. Analysis of the signaling pathways associated with DEGs in the condition of the tMCAO mod...

Additional file 13: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S13. The RNA-Seq analysis of DEGs associated with the functional category âNeurogenesisâ. ...

Additional file 2: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Lyudmila Dergunova (5722535)
Ivan Filippenkov (5722541)
Vasily Stavchansky (5722544)
Alina Denisova (5722547)
Vadim Yuzhakov (5722550)
Sergey Mozerov (5722553)
Leonid Gubsky (4524799)
Svetlana Limborska (264231)

September 2018

Table S2. DEGs that exhibited a reversed direction of expression in IR4.5 vs. SH4.5 and IR24 vs. SH2...

Additional file 10: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Abstract

Extracted data

Additional file 10: of Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model

Abstract

Extracted data

Related items

Related items