Additional file 9: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Additional file 1: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

Pedigree information, subpopulations, stalk traits BLUP values, and information of RNA-Seq reads for...

Data from: Increased power to dissect adaptive traits in global sorghum diversity using a nested association mapping population

Bouchet, Sophie
Olatoye, Marcus O.
Marla, Sandeep R.
Perumal, Ramasamy
Tesso, Tesfaye
Yu, Jianming
Tuinstra, Mitch
Morris, Geoffrey P.

June 2017

Adaptation of domesticated species to diverse agroclimatic regions has led to abundant trait diversi...

Additional file 2: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Quantitative PCR plots of the selected expressed genes for technical validation. (TIF 114 kb

Additional file 10: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer Spindel (692704)
Jeffery Dahlberg (5755148)
Matthew Colgan (5755151)
Joy Hollingsworth (5755154)
Julie Sievert (5755157)
Scott Staggenborg (5755160)
Robert Hutmacher (5755163)
Christer Jansson (84837)
John Vogel (34157)

September 2018

Top candidate genes from PhytoMine and literature for 213 GWAS peaks. (XLSX 232 kb

Additional file 3: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer Spindel (692704)
Jeffery Dahlberg (5755148)
Matthew Colgan (5755151)
Joy Hollingsworth (5755154)
Julie Sievert (5755157)
Scott Staggenborg (5755160)
Robert Hutmacher (5755163)
Christer Jansson (84837)
John Vogel (34157)

September 2018

Summary of pairwise LD across the ten chromosomes of S. bicolor in our GWAS diversity panel. (XLSX 1...

Additional file 7: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer Spindel (692704)
Jeffery Dahlberg (5755148)
Matthew Colgan (5755151)
Joy Hollingsworth (5755154)
Julie Sievert (5755157)
Scott Staggenborg (5755160)
Robert Hutmacher (5755163)
Christer Jansson (84837)
John Vogel (34157)

September 2018

Average SNP allele effects for each GWAS peak by trait and treatment. (XLSX 50 kb

Additional file 14: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer Spindel (692704)
Jeffery Dahlberg (5755148)
Matthew Colgan (5755151)
Joy Hollingsworth (5755154)
Julie Sievert (5755157)
Scott Staggenborg (5755160)
Robert Hutmacher (5755163)
Christer Jansson (84837)
John Vogel (34157)

September 2018

Potential evapotranspiration (ETo) and Irrigation water applications by treatment and date ranges in...

Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer E. Spindel
Jeffery Dahlberg
Matthew Colgan
Joy Hollingsworth
Julie Sievert
Scott H. Staggenborg
Robert Hutmacher
Christer Jansson
John P. Vogel

September 2018

Abstract Background Sorghum bicolor is the fifth most commonly grown cereal worldwide and is remarka...

Additional file 2: of Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum

Malleswari Gelli (3441917)
Sharon Mitchell (217511)
Kan Liu (250462)
Thomas Clemente (3441911)
Donald Weeks (3441920)
Chi Zhang (9857)
David Holding (3441914)
Ismail Dweikat (436864)

January 2016

Genetic distribution of SNPs discovered using genotyping-by-sequencing (GBS) in CK60 x China17 popul...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 8: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Description of the SNP position and SNP features on the sorghum chromosomes and validation of the bi...

Additional file 3: of Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum

Malleswari Gelli (3441917)
Sharon Mitchell (217511)
Kan Liu (250462)
Thomas Clemente (3441911)
Donald Weeks (3441920)
Chi Zhang (9857)
David Holding (3441914)
Ismail Dweikat (436864)

January 2016

The list of differentially expressed genes identified between CK60 and China17 using RNA-seq. (xls 1...

Additional file 9: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Description of transcripts retrieved from sorghum bicolor genome v 1.0. (XLSX 7247 kb

Additional file 10: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Primer sequences for selected variants to be used in building of integrated database. (XLSX 5540 kb

Additional file 11: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Adugna Woldesemayat (4715721)
Peter Van Heusden (3173346)
Bongani Ndimba (229738)
Alan Christoffels (16635)

December 2017

Description of drought responsive genes associated with different types of sorghum QTLs based on com...

Additional file 1: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

Pedigree information, subpopulations, stalk traits BLUP values, and information of RNA-Seq reads for...

Data from: Increased power to dissect adaptive traits in global sorghum diversity using a nested association mapping population

Bouchet, Sophie
Olatoye, Marcus O.
Marla, Sandeep R.
Perumal, Ramasamy
Tesso, Tesfaye
Yu, Jianming
Tuinstra, Mitch
Morris, Geoffrey P.

June 2017

Adaptation of domesticated species to diverse agroclimatic regions has led to abundant trait diversi...

Additional file 2: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Quantitative PCR plots of the selected expressed genes for technical validation. (TIF 114 kb

Additional file 10: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer Spindel (692704)
Jeffery Dahlberg (5755148)
Matthew Colgan (5755151)
Joy Hollingsworth (5755154)
Julie Sievert (5755157)
Scott Staggenborg (5755160)
Robert Hutmacher (5755163)
Christer Jansson (84837)
John Vogel (34157)

September 2018

Top candidate genes from PhytoMine and literature for 213 GWAS peaks. (XLSX 232 kb

Additional file 3: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer Spindel (692704)
Jeffery Dahlberg (5755148)
Matthew Colgan (5755151)
Joy Hollingsworth (5755154)
Julie Sievert (5755157)
Scott Staggenborg (5755160)
Robert Hutmacher (5755163)
Christer Jansson (84837)
John Vogel (34157)

September 2018

Summary of pairwise LD across the ten chromosomes of S. bicolor in our GWAS diversity panel. (XLSX 1...

Additional file 7: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer Spindel (692704)
Jeffery Dahlberg (5755148)
Matthew Colgan (5755151)
Joy Hollingsworth (5755154)
Julie Sievert (5755157)
Scott Staggenborg (5755160)
Robert Hutmacher (5755163)
Christer Jansson (84837)
John Vogel (34157)

September 2018

Average SNP allele effects for each GWAS peak by trait and treatment. (XLSX 50 kb

Additional file 14: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer Spindel (692704)
Jeffery Dahlberg (5755148)
Matthew Colgan (5755151)
Joy Hollingsworth (5755154)
Julie Sievert (5755157)
Scott Staggenborg (5755160)
Robert Hutmacher (5755163)
Christer Jansson (84837)
John Vogel (34157)

September 2018

Potential evapotranspiration (ETo) and Irrigation water applications by treatment and date ranges in...

Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Jennifer E. Spindel
Jeffery Dahlberg
Matthew Colgan
Joy Hollingsworth
Julie Sievert
Scott H. Staggenborg
Robert Hutmacher
Christer Jansson
John P. Vogel

September 2018

Abstract Background Sorghum bicolor is the fifth most commonly grown cereal worldwide and is remarka...

Additional file 2: of Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum

Malleswari Gelli (3441917)
Sharon Mitchell (217511)
Kan Liu (250462)
Thomas Clemente (3441911)
Donald Weeks (3441920)
Chi Zhang (9857)
David Holding (3441914)
Ismail Dweikat (436864)

January 2016

Genetic distribution of SNPs discovered using genotyping-by-sequencing (GBS) in CK60 x China17 popul...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 8: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Description of the SNP position and SNP features on the sorghum chromosomes and validation of the bi...

Additional file 3: of Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum

Malleswari Gelli (3441917)
Sharon Mitchell (217511)
Kan Liu (250462)
Thomas Clemente (3441911)
Donald Weeks (3441920)
Chi Zhang (9857)
David Holding (3441914)
Ismail Dweikat (436864)

January 2016

The list of differentially expressed genes identified between CK60 and China17 using RNA-seq. (xls 1...

Additional file 9: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Description of transcripts retrieved from sorghum bicolor genome v 1.0. (XLSX 7247 kb

Additional file 10: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Primer sequences for selected variants to be used in building of integrated database. (XLSX 5540 kb

Additional file 11: of An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Adugna Woldesemayat (4715721)
Peter Van Heusden (3173346)
Bongani Ndimba (229738)
Alan Christoffels (16635)

December 2017

Description of drought responsive genes associated with different types of sorghum QTLs based on com...

Additional file 1: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

Pedigree information, subpopulations, stalk traits BLUP values, and information of RNA-Seq reads for...

Data from: Increased power to dissect adaptive traits in global sorghum diversity using a nested association mapping population

Bouchet, Sophie
Olatoye, Marcus O.
Marla, Sandeep R.
Perumal, Ramasamy
Tesso, Tesfaye
Yu, Jianming
Tuinstra, Mitch
Morris, Geoffrey P.

June 2017

Adaptation of domesticated species to diverse agroclimatic regions has led to abundant trait diversi...

Additional file 2: of Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

Ratan Chopra (658418)
Gloria Burow (658419)
Chad Hayes (3413003)
Yves Emendack (3413000)
Zhanguo Xin (2503213)
John Burke (578290)

December 2015

Quantitative PCR plots of the selected expressed genes for technical validation. (TIF 114 kb

Additional file 9: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Abstract

Extracted data

Additional file 9: of Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

Abstract

Extracted data

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