Data, phylogenetic trees and R scripts used to generate results

Electronic supplements from The evolution of fungal substrate specificity in a widespread group of crustose lichens

Philipp Resl (3194154)
Fernando Fernández-Mendoza (771202)
Helmut Mayrhofer (3194169)
Toby Spribille (3194151)

September 2018

Extended materials and methods as well as results for individual analyses for this study as PDF

Phylogenomic tree of Rhizobiales bacteria

Gulnara Tagirdzhanova (12530167)

January 2023

Supplementary file associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts fr...

Phylogenetics Advance Access publication February 15, 2010 Phybase: an R package for species tree analysis

Liang Liu
Lili Yu

January 2010

Motivation: Phybase is an R package for phylogenetic analysis using species trees. It provides funct...

Data from: The evolution of fungal substrate specificity in a widespread group of crustose lichens

Resl, Philipp
Fernández-Mendoza, Fernando
Mayrhofer, Helmut
Spribille, Toby

September 2018

Lichens exhibit varying degrees of specialization with regard to the surfaces they colonize, ranging...

Table S1 from The evolution of fungal substrate specificity in a widespread group of crustose lichens

Philipp Resl (3194154)
Fernando Fernández-Mendoza (771202)
Helmut Mayrhofer (3194169)
Toby Spribille (3194151)

September 2018

A complete list of all used sequence vouchers and character coding information used in this study in...

Context-dependent evolution of high trophic position drives functional disparity in subterranean crustaceans: data and R code

Premate, Ester
Borko, Špela
Altermatt, Florian
Fišer, Cene

July 2023

The dataset contains morphological data, phylogenetic tree, and R code used in the analyses presente...

The evolution of fungal substrate specificity in a widespread group of crustose lichens

Resl, Philipp
Fernandez-Mendoza, Fernando
Mayrhofer, Helmut
Spribille, Toby

January 2018

Lichens exhibit varying degrees of specialization with regard to the surfaces they colonize, ranging...

Phylogenies

Galen, Spencer
Speer, Kelly
Perkins, Susan

August 2019

Contains phylogenetic tree files needed to replicate the analyses from the associated R script (R_co...

Lecanora markjohnstonii rDNA tree

Anderson Stewart, C. R. (5556572)
Lendemer, J.C. (5556569)
Keepers, K.G. (5556551)
Pogoda, C.S. (5556554)
Kane, N.C. (5556563)
McCain, C.M. (5556566)
Tripp, E.A. (5556560)

July 2018

This is a phylogenetic tree comprising 75 rDNA contigs of lichen mycobionts. The tree was used to...

Using Phylogenetic and Coalescent Methods to Understand the Species Diversity in the Cladia aggregata Complex (Ascomycota, Lecanorales)

Sittiporn Parnmen (110727)
Achariya Rangsiruji (110731)
Pachara Mongkolsuk (110733)
Kansri Boonpragob (110735)
Aparna Nutakki (110738)
H. Thorsten Lumbsch (110741)

December 2012

<div>The Cladia aggregata complex is one of the phenotypically most variable groups in l...

Data from 'Critical predictors of functional, phylogenetic, and taxonomic diversity are geographically structured in lichen epiphytic communities'

Pilar Hurtado (6522215)
María Prieto (6522305)
Gregorio Aragón (3243183)
Adrián Escudero (127819)
Isabel Martínez (6522459)

April 2019

There are two spreadsheets: 'Data' and 'Metadata'. 'Data' contains the raw data used in the structur...

Data from: Clade composition of a plant community indicates its phylogenetic diversity

Bitomský, M

Data from: Bitomský M., Mládková P., Pakeman RJ, & Duchoslav M. (accepted pending minor revision 12....

Resolving evolutionary relationships in lichen-forming fungi using diverse phylogenomic datasets and analytical approa.

Steven, Leavitt
Felix, Grewe
Todd, Widhelm
Lucia, Muggia
Brian, Wray
Thorsten, Lumbsch.

January 2016

Evolutionary histories are now being inferred from unprecedented, genome-scale datasets for a broad ...

Phylogenetic affiliations of members of the heterogeneous lichen-forming genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota)

January 2011

Phylogenetic affiliations of members of the heterogeneous lichen-forming genus Lecidea sensu Zahlbru...

Scripts and description of bioinformatic analyses from Tagirdzhanova et al. 2023

Gulnara Tagirdzhanova (12530167)

January 2023

Supplementary files associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts f...

Electronic supplements from The evolution of fungal substrate specificity in a widespread group of crustose lichens

Philipp Resl (3194154)
Fernando Fernández-Mendoza (771202)
Helmut Mayrhofer (3194169)
Toby Spribille (3194151)

September 2018

Extended materials and methods as well as results for individual analyses for this study as PDF

Phylogenomic tree of Rhizobiales bacteria

Gulnara Tagirdzhanova (12530167)

January 2023

Supplementary file associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts fr...

Phylogenetics Advance Access publication February 15, 2010 Phybase: an R package for species tree analysis

Liang Liu
Lili Yu

January 2010

Motivation: Phybase is an R package for phylogenetic analysis using species trees. It provides funct...

Data from: The evolution of fungal substrate specificity in a widespread group of crustose lichens

Resl, Philipp
Fernández-Mendoza, Fernando
Mayrhofer, Helmut
Spribille, Toby

September 2018

Lichens exhibit varying degrees of specialization with regard to the surfaces they colonize, ranging...

Table S1 from The evolution of fungal substrate specificity in a widespread group of crustose lichens

Philipp Resl (3194154)
Fernando Fernández-Mendoza (771202)
Helmut Mayrhofer (3194169)
Toby Spribille (3194151)

September 2018

A complete list of all used sequence vouchers and character coding information used in this study in...

Context-dependent evolution of high trophic position drives functional disparity in subterranean crustaceans: data and R code

Premate, Ester
Borko, Špela
Altermatt, Florian
Fišer, Cene

July 2023

The dataset contains morphological data, phylogenetic tree, and R code used in the analyses presente...

The evolution of fungal substrate specificity in a widespread group of crustose lichens

Resl, Philipp
Fernandez-Mendoza, Fernando
Mayrhofer, Helmut
Spribille, Toby

January 2018

Lichens exhibit varying degrees of specialization with regard to the surfaces they colonize, ranging...

Phylogenies

Galen, Spencer
Speer, Kelly
Perkins, Susan

August 2019

Contains phylogenetic tree files needed to replicate the analyses from the associated R script (R_co...

Lecanora markjohnstonii rDNA tree

Anderson Stewart, C. R. (5556572)
Lendemer, J.C. (5556569)
Keepers, K.G. (5556551)
Pogoda, C.S. (5556554)
Kane, N.C. (5556563)
McCain, C.M. (5556566)
Tripp, E.A. (5556560)

July 2018

This is a phylogenetic tree comprising 75 rDNA contigs of lichen mycobionts. The tree was used to...

Using Phylogenetic and Coalescent Methods to Understand the Species Diversity in the Cladia aggregata Complex (Ascomycota, Lecanorales)

Sittiporn Parnmen (110727)
Achariya Rangsiruji (110731)
Pachara Mongkolsuk (110733)
Kansri Boonpragob (110735)
Aparna Nutakki (110738)
H. Thorsten Lumbsch (110741)

December 2012

<div>The Cladia aggregata complex is one of the phenotypically most variable groups in l...

Data from 'Critical predictors of functional, phylogenetic, and taxonomic diversity are geographically structured in lichen epiphytic communities'

Pilar Hurtado (6522215)
María Prieto (6522305)
Gregorio Aragón (3243183)
Adrián Escudero (127819)
Isabel Martínez (6522459)

April 2019

There are two spreadsheets: 'Data' and 'Metadata'. 'Data' contains the raw data used in the structur...

Data from: Clade composition of a plant community indicates its phylogenetic diversity

Bitomský, M

Data from: Bitomský M., Mládková P., Pakeman RJ, & Duchoslav M. (accepted pending minor revision 12....

Resolving evolutionary relationships in lichen-forming fungi using diverse phylogenomic datasets and analytical approa.

Steven, Leavitt
Felix, Grewe
Todd, Widhelm
Lucia, Muggia
Brian, Wray
Thorsten, Lumbsch.

January 2016

Evolutionary histories are now being inferred from unprecedented, genome-scale datasets for a broad ...

Phylogenetic affiliations of members of the heterogeneous lichen-forming genus Lecidea sensu Zahlbruckner (Lecanoromycetes, Ascomycota)

January 2011

Phylogenetic affiliations of members of the heterogeneous lichen-forming genus Lecidea sensu Zahlbru...

Scripts and description of bioinformatic analyses from Tagirdzhanova et al. 2023

Gulnara Tagirdzhanova (12530167)

January 2023

Supplementary files associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts f...

Electronic supplements from The evolution of fungal substrate specificity in a widespread group of crustose lichens

Philipp Resl (3194154)
Fernando Fernández-Mendoza (771202)
Helmut Mayrhofer (3194169)
Toby Spribille (3194151)

September 2018

Extended materials and methods as well as results for individual analyses for this study as PDF

Phylogenomic tree of Rhizobiales bacteria

Gulnara Tagirdzhanova (12530167)

January 2023

Supplementary file associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts fr...

Phylogenetics Advance Access publication February 15, 2010 Phybase: an R package for species tree analysis

Liang Liu
Lili Yu

January 2010

Motivation: Phybase is an R package for phylogenetic analysis using species trees. It provides funct...

Data, phylogenetic trees and R scripts used to generate results

Abstract

Extracted data

Data, phylogenetic trees and R scripts used to generate results

Abstract

Extracted data

Topics

Related items

Related items

Topics