Additional file 5: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Additional file 3: Figure S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Comparative genome analysis of P. yonginensis DCY84T and P. polymyxa M1 using the Artemis software a...

Additional file 7: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Complementary data on the detection of prophages in the genomes of rhizobial strains. (XLSX 25 kb

Additional file 4: Table S4. of Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes

Daniel Wibberg (839038)
Louise Andersson (3538334)
Georgios Tzelepis (3538331)
Oliver Rupp (508220)
Jochen Blom (104512)
Lukas Jelonek (839039)
Alfred PĂźhler (3538337)
Johan Fogelqvist (110490)
Mark Varrelmann (3332838)
Andreas SchlĂźter (3447287)
Christina Dixelius (110494)

March 2016

Sequencing and assembly statistics of R. solani AG-2IIIB EST datasets. (DOCX 50 kb

Additional file 4: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S4. Nitrogen fixation protein similarities between M. amorphae CCNWGS0123 and other four Mesor...

Additional file 1: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S1. Compatibility of M. amorphae CCNWGS0123 with different wild and cultivated legume species....

Additional file 3: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S3. Genes participating in nitrogen synthesis and degradation. (DOCX 18 kb

Additional file 6: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S6. Genes involved in heavy metal resistant and homeostasis throughout the whole genome. (XLSX...

Additional file 5: Table S5. of Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions

Ernesto OrmeĂąo-Orrillo (3449180)
Douglas Gomes (3449177)
Pablo del Cerro (2620390)
Ana Vasconcelos (3449174)
Carlos Canchaya (255570)
Luiz Almeida (3449171)
Fabio Mercante (3449165)
Francisco Ollero (3449162)
Manuel MegĂas (3449183)
Mariangela Hungria (351664)

August 2016

Homology obtained in the comparison of nodulation genes of R. leucaenae CPAO 29.8 in comparison to s...

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Additional file 5: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Shared and strain-specific genes in the analyzed rhizobial strains. (XLSX 455 kb

Additional file 2: of High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia

Leila Eshraghi (3489974)
Sofie De Meyer (3489971)
Rui Tian (635672)
Rekha Seshadri (56912)
Natalia Ivanova (8850)
Amrita Pati (18289)
Victor Markowitz (610405)
Tanja Woyke (111784)
Nikos Kyrpides (8859)
Ravi Tiwari (3433439)
Ron Yates (3459590)
John Howieson (3459248)
Wayne Reeve (3414110)

October 2015

Annotation Summary, GenBank Accession Summary, Strain ID Summary, Plant Name Summary, Scientific Nam...

Additional file 4: Table S4. of Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions

Ernesto OrmeĂąo-Orrillo (3449180)
Douglas Gomes (3449177)
Pablo del Cerro (2620390)
Ana Vasconcelos (3449174)
Carlos Canchaya (255570)
Luiz Almeida (3449171)
Fabio Mercante (3449165)
Francisco Ollero (3449162)
Manuel MegĂas (3449183)
Mariangela Hungria (351664)

August 2016

Homology obtained in the comparison of nodulation genes of R. leucaenae CFN 299T in comparison to st...

Additional file 1: Table S1. of Genome sequence of the clover symbiont Rhizobium leguminosarum bv. trifolii strain CC275e

Clément Delestre (3440672)
Aurélie Laugraud (259686)
Hayley Ridgway (3440678)
Clive Ronson (3414113)
Maureen O’Callaghan (3440684)
Brent Barrett (3440669)
Ross Ballard (3440693)
Andrew Griffiths (3440687)
Sandra Young (3440690)
Celine Blond (3440675)
Emily Gerard (3440681)
Steve Wakelin (3440696)

December 2015

List of strain names and associated NCBI GenBank accession numbers for bacterial isolates in Fig. 2....

Additional file 4: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Comparison of gene functions covered by seeds strains compared with nodule strains. (PPTX 206 kb

Additional file 3: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Average nucleotide identity (ANIm) and genome coverage of seed and nodule rhizobial strains. (PPTX 1...

Additional file 3: Figure S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Comparative genome analysis of P. yonginensis DCY84T and P. polymyxa M1 using the Artemis software a...

Additional file 7: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Complementary data on the detection of prophages in the genomes of rhizobial strains. (XLSX 25 kb

Additional file 4: Table S4. of Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes

Daniel Wibberg (839038)
Louise Andersson (3538334)
Georgios Tzelepis (3538331)
Oliver Rupp (508220)
Jochen Blom (104512)
Lukas Jelonek (839039)
Alfred PĂźhler (3538337)
Johan Fogelqvist (110490)
Mark Varrelmann (3332838)
Andreas SchlĂźter (3447287)
Christina Dixelius (110494)

March 2016

Sequencing and assembly statistics of R. solani AG-2IIIB EST datasets. (DOCX 50 kb

Additional file 4: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S4. Nitrogen fixation protein similarities between M. amorphae CCNWGS0123 and other four Mesor...

Additional file 1: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S1. Compatibility of M. amorphae CCNWGS0123 with different wild and cultivated legume species....

Additional file 3: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S3. Genes participating in nitrogen synthesis and degradation. (DOCX 18 kb

Additional file 6: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Xinye Wang (420298)
Yantao Luo (4864198)
Dongying Liu (5766896)
Jiamei Wang (618995)
Shi Wei (1804564)
Liang Zhao (94728)

September 2018

Table S6. Genes involved in heavy metal resistant and homeostasis throughout the whole genome. (XLSX...

Additional file 5: Table S5. of Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions

Ernesto OrmeĂąo-Orrillo (3449180)
Douglas Gomes (3449177)
Pablo del Cerro (2620390)
Ana Vasconcelos (3449174)
Carlos Canchaya (255570)
Luiz Almeida (3449171)
Fabio Mercante (3449165)
Francisco Ollero (3449162)
Manuel MegĂas (3449183)
Mariangela Hungria (351664)

August 2016

Homology obtained in the comparison of nodulation genes of R. leucaenae CPAO 29.8 in comparison to s...

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Additional file 5: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Shared and strain-specific genes in the analyzed rhizobial strains. (XLSX 455 kb

Additional file 2: of High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia

Leila Eshraghi (3489974)
Sofie De Meyer (3489971)
Rui Tian (635672)
Rekha Seshadri (56912)
Natalia Ivanova (8850)
Amrita Pati (18289)
Victor Markowitz (610405)
Tanja Woyke (111784)
Nikos Kyrpides (8859)
Ravi Tiwari (3433439)
Ron Yates (3459590)
John Howieson (3459248)
Wayne Reeve (3414110)

October 2015

Annotation Summary, GenBank Accession Summary, Strain ID Summary, Plant Name Summary, Scientific Nam...

Additional file 4: Table S4. of Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions

Ernesto OrmeĂąo-Orrillo (3449180)
Douglas Gomes (3449177)
Pablo del Cerro (2620390)
Ana Vasconcelos (3449174)
Carlos Canchaya (255570)
Luiz Almeida (3449171)
Fabio Mercante (3449165)
Francisco Ollero (3449162)
Manuel MegĂas (3449183)
Mariangela Hungria (351664)

August 2016

Homology obtained in the comparison of nodulation genes of R. leucaenae CFN 299T in comparison to st...

Additional file 1: Table S1. of Genome sequence of the clover symbiont Rhizobium leguminosarum bv. trifolii strain CC275e

Clément Delestre (3440672)
Aurélie Laugraud (259686)
Hayley Ridgway (3440678)
Clive Ronson (3414113)
Maureen O’Callaghan (3440684)
Brent Barrett (3440669)
Ross Ballard (3440693)
Andrew Griffiths (3440687)
Sandra Young (3440690)
Celine Blond (3440675)
Emily Gerard (3440681)
Steve Wakelin (3440696)

December 2015

List of strain names and associated NCBI GenBank accession numbers for bacterial isolates in Fig. 2....

Additional file 4: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Comparison of gene functions covered by seeds strains compared with nodule strains. (PPTX 206 kb

Additional file 3: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Average nucleotide identity (ANIm) and genome coverage of seed and nodule rhizobial strains. (PPTX 1...

Additional file 3: Figure S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Comparative genome analysis of P. yonginensis DCY84T and P. polymyxa M1 using the Artemis software a...

Additional file 7: of Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)

Alejandro Aguilar (531028)
Yolanda Mora (129646)
Araceli Dávalos (5704760)
Lourdes Girard (2002)
Jaime Mora (3543212)
Humberto Peralta (3543215)

August 2018

Complementary data on the detection of prophages in the genomes of rhizobial strains. (XLSX 25 kb

Additional file 4: Table S4. of Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes

Daniel Wibberg (839038)
Louise Andersson (3538334)
Georgios Tzelepis (3538331)
Oliver Rupp (508220)
Jochen Blom (104512)
Lukas Jelonek (839039)
Alfred PĂźhler (3538337)
Johan Fogelqvist (110490)
Mark Varrelmann (3332838)
Andreas SchlĂźter (3447287)
Christina Dixelius (110494)

March 2016

Sequencing and assembly statistics of R. solani AG-2IIIB EST datasets. (DOCX 50 kb

Additional file 5: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Abstract

Extracted data

Additional file 5: of Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123

Abstract

Extracted data

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