Time window specific identification of upstream analysis of the DEGcts using Ingenuity Pathway Analysis (IPA). The coloured circles are upstream regulators identified for each comparison of consecutive time points with an activation or inhibition Z score of respectively > 2.0 or S5 Table). Circle colours correspond to colours of the arrows linking the consecutive time points. Active upstream regulators are displayed at the top of the Figure and the inhibited upstream regulators are at the bottom of the Figure. The upstream regulators are grouped into four different categories: ‘Inflammatory factors’, ‘Transcription regulators’, ‘Hormones and growth factors’ and ‘Other’. Aldos = Aldosterone, D-gluc = D-glucose, Dinop = Dinoprost, Homocys = H...
<p>Red bars represent the persistently upregulated KEGG pathway enrichment significance levels, and ...
(A) Heatmap visualization (IPA activation z-score) of selected IPA functions regulated over the cour...
(a) Graphic demonstrating expression pattern for late upregulated (red) and downregulated (blue) gen...
<p>IPA analysis identifies 5 upstream regulators related to differentially expressed genes (DEGs).</...
<p>(<b>A</b>) Predicted activated cytokines from IPA upstream analysis; stimulations analysed indepe...
<p>Predicted activation status of upstream regulators that control differentially expressed genes an...
<p>The Z-score is a prediction of the activation status of upstream transcriptional regulators using...
<p>The Z-score is a prediction of the activation states of upstream transcriptional regulators using...
(a) Curve demonstrating expression pattern for early upregulated (red) and downregulated (blue) gene...
<p>Upstream regulators and their targets displayed as a network of interactions with their respectiv...
<p>Thirty four out of 388 genes are direct HIF1A downstream targets according to the Ingenuity Knowl...
<p>Each column represents a time point, each row represents a gene. Expressional differences are sho...
<p>Green circles represent the genes down-regulated in PKS probands, and red circles represent the g...
Connections analysis was applied to the top 1000 upregulated DEGs (limit of algorithm) in CAsE-PE vs...
<p>Upstream regulators predicted based on genes that were significantly different for lesional skin ...
<p>Red bars represent the persistently upregulated KEGG pathway enrichment significance levels, and ...
(A) Heatmap visualization (IPA activation z-score) of selected IPA functions regulated over the cour...
(a) Graphic demonstrating expression pattern for late upregulated (red) and downregulated (blue) gen...
<p>IPA analysis identifies 5 upstream regulators related to differentially expressed genes (DEGs).</...
<p>(<b>A</b>) Predicted activated cytokines from IPA upstream analysis; stimulations analysed indepe...
<p>Predicted activation status of upstream regulators that control differentially expressed genes an...
<p>The Z-score is a prediction of the activation status of upstream transcriptional regulators using...
<p>The Z-score is a prediction of the activation states of upstream transcriptional regulators using...
(a) Curve demonstrating expression pattern for early upregulated (red) and downregulated (blue) gene...
<p>Upstream regulators and their targets displayed as a network of interactions with their respectiv...
<p>Thirty four out of 388 genes are direct HIF1A downstream targets according to the Ingenuity Knowl...
<p>Each column represents a time point, each row represents a gene. Expressional differences are sho...
<p>Green circles represent the genes down-regulated in PKS probands, and red circles represent the g...
Connections analysis was applied to the top 1000 upregulated DEGs (limit of algorithm) in CAsE-PE vs...
<p>Upstream regulators predicted based on genes that were significantly different for lesional skin ...
<p>Red bars represent the persistently upregulated KEGG pathway enrichment significance levels, and ...
(A) Heatmap visualization (IPA activation z-score) of selected IPA functions regulated over the cour...
(a) Graphic demonstrating expression pattern for late upregulated (red) and downregulated (blue) gen...